View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11092_high_9 (Length: 435)

Name: NF11092_high_9
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11092_high_9
NF11092_high_9
[»] chr3 (8 HSPs)
chr3 (1-303)||(8585669-8585970)
chr3 (123-346)||(13397735-13397958)
chr3 (123-224)||(10129302-10129403)
chr3 (123-228)||(11779573-11779678)
chr3 (124-349)||(13163232-13163457)
chr3 (124-223)||(13335282-13335381)
chr3 (123-224)||(9841235-9841336)
chr3 (103-223)||(13173406-13173526)
[»] chr4 (1 HSPs)
chr4 (296-371)||(17850690-17850765)
[»] scaffold0002 (3 HSPs)
scaffold0002 (124-349)||(143531-143756)
scaffold0002 (124-349)||(151836-152061)
scaffold0002 (103-223)||(133462-133582)
[»] chr1 (1 HSPs)
chr1 (134-216)||(828272-828354)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 8585669 - 8585970
Alignment:
Q  1 catctgttgaggaagtgcctaacaacgactgattgaaagtgattggatggttgaggaacgaaggagagaacggtcatatnnnnnnntggactctagactc 100  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||       ||||||||||||||    
T  8585669 catctgttgaggcagtgccttacaacgactgattgaaagtcattggatggttgaggagcgagggagagaacgttcatataaaaaaatggactctagactc 8585768  T
Q  101 cgacagccgtaaatgtgaatactttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtg 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8585769 cgacagccataaatgtgaatactttggagcgcagggaaaccatccaatgagaaggcggtaagtccttgacaactattccataactccaatttcacaagtg 8585868  T
Q  201 atgtgtaactgctccatgtttcagaagggaagaatgtcaaattcggacaccgatgaataacaagtgactgtaatgaaaggggaagaccatcaactggaaa 300  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| ||| || | ||||||||||||||||| ||||||||||||| |||||||||||||    
T  8585869 atgtgtaactgctccatgtttcagaaggggagaatgttaaattcgaaca-cgttcaataacaagtgactgtagtgaaaggggaagatcatcaactggaaa 8585967  T
Q  301 tgc 303  Q
    |||    
T  8585968 tgc 8585970  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 346
Target Start/End: Complemental strand, 13397958 - 13397735
Alignment:
Q  123 tttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgatgtgtaactgctccatgtttc 222  Q
    |||||||| |||| ||||||| |||| | |||| |||||||   | ||||| |||   |||||| ||  ||||||||||||||||| |||||||||||||    
T  13397958 tttggagcacaggaaaaccattcagttgaaaggaggtaagtgaatcacaacaattttttaactctaaagtcacaagtgatgtgtaattgctccatgtttc 13397859  T
Q  223 agaagggaagaatgtcaaattcggacaccgatgaataacaagtgactgtaatgaaaggggaagaccatcaactggaaatgcatcgagagaaggaatatca 322  Q
    || | | |||||||  |||||| |||||  ||  |||  ||||||||| || |||  |||||||||||   |||||||||||  |||||| | ||||| |    
T  13397858 aggacgcaagaatgctaaattctgacactcatctatacgaagtgactgcaacgaagtgggaagaccatttgctggaaatgcagtgagagaggaaatataa 13397759  T
Q  323 ttgagtgtcaagtgttgaagacaa 346  Q
     ||||   ||||||||||||||||    
T  13397758 atgagatccaagtgttgaagacaa 13397735  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 10129403 - 10129302
Alignment:
Q  123 tttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgatgtgtaactgctccatgtttc 222  Q
    |||||||||||||||||||||| ||||| ||||  |||||| | | ||||||| ||| ||| || |   ||||||||||||||||| ||||||| |||||    
T  10129403 tttggagcgcagggaaaccatcaagtggaaaggatgtaagtgcatcacaactactccgtaaatcaatactcacaagtgatgtgtaattgctccacgtttc 10129304  T
Q  223 ag 224  Q
    ||    
T  10129303 ag 10129302  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 11779573 - 11779678
Alignment:
Q  123 tttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgatgtgtaactgctccatgtttc 222  Q
    |||||||| ||||||||||||| ||||||||||  |||||| | | ||||||| ||||||| |  |   |||||||||| |||||| ||||||| |||||    
T  11779573 tttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatcacaactactccataaataaagactcacaagtgaagtgtaattgctccacgtttc 11779672  T
Q  223 agaagg 228  Q
    ||||||    
T  11779673 agaagg 11779678  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 349
Target Start/End: Complemental strand, 13163457 - 13163232
Alignment:
Q  124 ttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgatgtgtaactgctccatgtttca 223  Q
    |||||| || |||||||||||||  ||||| | ||||||| | | ||||||||||||||| | |||  ||||||| ||||||||| ||| ||||||||||    
T  13163457 ttggagggctgggaaaccatccaaagggaatgaggtaagtgcataacaactattccataagtgcaaagtcacaagagatgtgtaattgccccatgtttca 13163358  T
Q  224 gaagggaagaatgtcaaattcggacaccgatgaataacaagtgactgtaatgaaaggggaagaccatcaactggaaatgcatcgagagaaggaatatcat 323  Q
       || | |||||  |||||||||||   || |||   ||||||||| ||||||  ||| ||||||||   |||||| ||| ||||||| |||| |||||    
T  13163357 agtggcaggaatgctaaattcggacaatcatcaattctaagtgactgcaatgaagtgggtagaccatctgttggaaaagcagcgagagatggaacatcat 13163258  T
Q  324 tgagtgtcaagtgttgaagacaaatg 349  Q
      ||| |||||  | |||||||||||    
T  13163257 aaagtatcaagaatcgaagacaaatg 13163232  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 13335381 - 13335282
Alignment:
Q  124 ttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgatgtgtaactgctccatgtttca 223  Q
    |||||| || |||||||||||||  ||||| | ||||||| | | ||||||||||||||| | |||  ||||||| ||||||||| ||| ||||||||||    
T  13335381 ttggagggctgggaaaccatccaaagggaatgaggtaagtgcataacaactattccataagtgcaaagtcacaagagatgtgtaattgccccatgtttca 13335282  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 9841336 - 9841235
Alignment:
Q  123 tttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgatgtgtaactgctccatgtttc 222  Q
    |||||||||||||||||||||| ||||||||||  ||||||   | ||| ||   ||||||||  |   ||||||||||||||||| ||||||| |||||    
T  9841336 tttggagcgcagggaaaccatcaagtgggaaggatgtaagtgtatcacagctccaccataactgaagactcacaagtgatgtgtaattgctccacgtttc 9841237  T
Q  223 ag 224  Q
    ||    
T  9841236 ag 9841235  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 13173526 - 13173406
Alignment:
Q  103 acagccgtaaatgtgaatactttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgat 202  Q
    |||||| | ||||| || || |||||| || |||||||||||||  ||||| | ||||||| | | |||||||||| |||| | |||   |||||| |||    
T  13173526 acagccatcaatgtaaagaccttggagggctgggaaaccatccaaagggaatgaggtaagtgcataacaactattcaataagtgcaaagccacaagagat 13173427  T
Q  203 gtgtaactgctccatgtttca 223  Q
    |||||| ||| ||||||||||    
T  13173426 gtgtaattgccccatgtttca 13173406  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 17850690 - 17850765
Alignment:
Q  296 ggaaatgcatcgagagaaggaatatcattgagtgtcaagtgttgaagacaaatgttgttcatcatcattttaggca 371  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||||| || |  |||| |||||||||||||    
T  17850690 ggaaatgcagtgagagacggaatatcattgagtgtcaagtgttgaagacaagtgctcctcataatcattttaggca 17850765  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 349
Target Start/End: Original strand, 143531 - 143756
Alignment:
Q  124 ttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgatgtgtaactgctccatgtttca 223  Q
    |||||| || |||||||||||||  ||||| | ||||||| | | ||||||||||||||| | |||  ||||||| ||||||||| ||| ||||||||||    
T  143531 ttggagggctgggaaaccatccaaagggaatgaggtaagtgcataacaactattccataagtgcaaagtcacaagagatgtgtaattgccccatgtttca 143630  T
Q  224 gaagggaagaatgtcaaattcggacaccgatgaataacaagtgactgtaatgaaaggggaagaccatcaactggaaatgcatcgagagaaggaatatcat 323  Q
       || | |||||  |||||||||||   || |||   ||||||||| ||||||  ||| ||||||||   |||||| ||| ||||||| |||| |||||    
T  143631 agtggcaggaatgctaaattcggacaatcatcaattctaagtgactgcaatgaagtgggtagaccatctgttggaaaagcagcgagagatggaacatcat 143730  T
Q  324 tgagtgtcaagtgttgaagacaaatg 349  Q
      ||| |||||  | |||||||||||    
T  143731 aaagtatcaagaatcgaagacaaatg 143756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 349
Target Start/End: Original strand, 151836 - 152061
Alignment:
Q  124 ttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgatgtgtaactgctccatgtttca 223  Q
    |||||| || |||||||||||||  ||||| | ||||||| | | ||||||||||||||| | |||  ||||||| ||||||||| ||| ||||||||||    
T  151836 ttggagggctgggaaaccatccaaagggaatgaggtaagtgcataacaactattccataagtgcaaagtcacaagagatgtgtaattgccccatgtttca 151935  T
Q  224 gaagggaagaatgtcaaattcggacaccgatgaataacaagtgactgtaatgaaaggggaagaccatcaactggaaatgcatcgagagaaggaatatcat 323  Q
       || | |||||  |||||||||||   || |||   ||||||||| ||||||  ||| ||||||||   |||||| ||| ||||||| |||| |||||    
T  151936 agtggcaggaatgctaaattcggacaatcatcaattctaagtgactgcaatgaagtgggtagaccatctgttggaaaagcagcgagagatggaacatcat 152035  T
Q  324 tgagtgtcaagtgttgaagacaaatg 349  Q
      ||| |||||  | |||||||||||    
T  152036 aaagtatcaagaatcgaagacaaatg 152061  T

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Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 133462 - 133582
Alignment:
Q  103 acagccgtaaatgtgaatactttggagcgcagggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgat 202  Q
    |||||| | ||||| || || |||||| || |||||||||||||  ||||| | ||||||| | | |||||||||| |||| | |||   |||||| |||    
T  133462 acagccatcaatgtaaagaccttggagggctgggaaaccatccaaagggaatgaggtaagtgcataacaactattcaataagtgcaaagccacaagagat 133561  T
Q  203 gtgtaactgctccatgtttca 223  Q
    |||||| ||| ||||||||||    
T  133562 gtgtaattgccccatgtttca 133582  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 828354 - 828272
Alignment:
Q  134 gggaaaccatccagtgggaaggcggtaagtccttgacaactattccataactccaatttcacaagtgatgtgtaactgctcca 216  Q
    |||||||||| ||||||||||| ||||||| | | ||||| ||  | |||||| ||||||||||||||||||||  |||||||    
T  828354 gggaaaccattcagtgggaaggaggtaagtacatcacaacaatctcctaactctaatttcacaagtgatgtgtacttgctcca 828272  T

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