View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_10 (Length: 441)
Name: NF11092_low_10
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 60 - 424
Target Start/End: Original strand, 43541907 - 43542274
Alignment:
| Q |
60 |
gatgacagtacaatggccaataaatctttagcgttttgattactcatgagggctaccttctggctgctatccatgacaatgaatagatttggtaagattc |
159 |
Q |
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| T |
43541907 |
gatgacagtacaatggctaataaatctttagcgttttgattactcatgagggctaccttctggctgctatccatgacaatgaatagatttgatcagattc |
43542006 |
T |
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| Q |
160 |
tcagaaatctctcttgactcctgcttctgaaagcctcggattctggctgcaagactagctatattact---atcatcatcatcataaggacatgtctcat |
256 |
Q |
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| T |
43542007 |
tcagaaatctctcttgactcctgcttctgaaagcctcggattctggctgcaagactagctatattactatcatcatcatcatcataaggacatgtctcat |
43542106 |
T |
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| Q |
257 |
tcaaaactacaaaagataaccaaccagaaaatgctatcatcaactgtcatattnnnnnnntacaacgattaacaaaaggagctcacaacattaatccata |
356 |
Q |
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| T |
43542107 |
tcaaaactacaaaagataaccaaccagaaaatgttatcatcaactgtcatattaaaaaaatacaacgattaacaaaaggagctcacaacattaatccata |
43542206 |
T |
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| Q |
357 |
tatgactgaattaatcttgaacaaactatattatatgctacatatttgatgacataatggtaatgttt |
424 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43542207 |
tatgagtgaattaatcttgaacaaactatattatatgctacatatttgatgacataatggtaatgttt |
43542274 |
T |
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