View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_12 (Length: 427)
Name: NF11092_low_12
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_12 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 5 - 414
Target Start/End: Complemental strand, 10511050 - 10510645
Alignment:
| Q |
5 |
agggaagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaataaattaagaacttaaatgcattgtagtgaaaatgagaa |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
10511050 |
agggaagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaacaaattaagaacttaaatgcattgtagtgaaaatgagga |
10510951 |
T |
|
| Q |
105 |
aaattcttgaattctatgtggcaattattggcccacaaaaataaattaacttgagaacatcaacattgttctagcggttgagatgctctaacggttttct |
204 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
10510950 |
aagttcttgaattctatgtggcaattattggcccacaaaaat----taacttgagaacatcaacattgttctagcggttgagatgctctaacagtttcct |
10510855 |
T |
|
| Q |
205 |
ggtaaaacctctggtcaccccttgcaccttttaggatgtggtcaatataacttgtcctttgctgtagaggatgatgatttatggaggaatttgtcggatc |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10510854 |
ggtaaaacctctggtcaccccttgcaccttttaggatgtggtcaatataacttgtcctttgctgtagaggatagtgatttatggaggaatttgtcggatc |
10510755 |
T |
|
| Q |
305 |
actatgggttcggacgtatgcttgtctgtgtcccaaggttccttcctatttgcgatgctctcgggtgatcttgccatggtttctggaggggcttttgcct |
404 |
Q |
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||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10510754 |
actatgggtccggacgtatgcttgtctgcgtcccacggttccttcctatttgcgatgctctcgggtgatcttgccatggtttctagaggggcttttgcct |
10510655 |
T |
|
| Q |
405 |
attgttggtg |
414 |
Q |
| |
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|||||||||| |
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| T |
10510654 |
attgttggtg |
10510645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 8436444 - 8436267
Alignment:
| Q |
9 |
aagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaataaattaagaacttaaatgcattgtagtgaaaatga-gaaaaa |
107 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | | |
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| T |
8436444 |
aagaggaaatgaaaagaaaatatactatgtgaagtttatggtagaccccatataaaacaaattaagaacttaaatgcattgtagtgaaaatgagggagtg |
8436345 |
T |
|
| Q |
108 |
ttcttgaattctatgtggcaattattggcccacaaaaataaattaacttgagaacatcaacattgttctagcggttgagatg |
189 |
Q |
| |
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|||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8436344 |
atcttgaatcctatgtggcaattattggcctacaa----aaattaacttgagaacatcaacattgttctagcggtggagatg |
8436267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 13430785 - 13430869
Alignment:
| Q |
8 |
gaagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaataaattaagaacttaaatgcattgtag |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13430785 |
gaagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaacaaattaagaacttaaatgcattgtag |
13430869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 25001202 - 25001270
Alignment:
| Q |
8 |
gaagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaataaattaagaa |
76 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
25001202 |
gaagaggaaaggaaatgaatatataatatgtgaagttcatggtggacctcatataaaacaaactaagaa |
25001270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 25001287 - 25001362
Alignment:
| Q |
71 |
taagaacttaaatgcattgtagtgaaaatgagaaaaattcttgaattctatgtggcaattattggcccacaaaaat |
146 |
Q |
| |
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||||||||| ||| ||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
25001287 |
taagaacttgaatacattgcagtcaaaatgatgaaaattcttgaattctatgtggtaattattggcccaaaaaaat |
25001362 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 153043 - 152905
Alignment:
| Q |
8 |
gaagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaataaattaagaacttaaatgcattgtagtgaaaatgagaaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
153043 |
gaagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaacaaattaagaacttaaatgcattgtagtgaaaatgaggaaag |
152944 |
T |
|
| Q |
108 |
ttcttgaattctatgtggcaattattggcccacaaaaat |
146 |
Q |
| |
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||||||||| |||| |||||||| ||||||||||||||| |
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| T |
152943 |
ttcttgaatcctatatggcaattgttggcccacaaaaat |
152905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 43377184 - 43377367
Alignment:
| Q |
8 |
gaagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaataaattaagaacttaaatgcattgtagtgaaaatgagaaaaa |
107 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |
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| T |
43377184 |
gaagagaaaaggaaaataaaatataatatggaaagttcatggtggaccccatataaaataaattaagaacttagatgcattgtagcaaaaatgaggaaag |
43377283 |
T |
|
| Q |
108 |
ttcttgaattctatgtggcaattattggcccacaaaaataaattaacttgagaacatcaacattgttctagcggttgagatgctctaa |
195 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
43377284 |
ttcttaaatcctatgtggcaattattggcccacaa----aaattaacttgagaacatcaacattgttctaggagcggagatgctctaa |
43377367 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 48757126 - 48757282
Alignment:
| Q |
18 |
ggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaataaattaagaacttaaatgcattgtagtgaaaatg-agaaaaattcttgaat |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||| |
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|
| T |
48757126 |
ggaaaagaaaatac--tatgtgaagttcatggtggaccgcatataaaacaaattaagaacttaaatgaattgtagtgaaaatgaagaagtgttcttgaat |
48757223 |
T |
|
| Q |
117 |
tctatgtggcaattattggcccacaaaaataaattaacttgagaacatcaacattgttctagc |
179 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
48757224 |
cctatgtagcaattattggcccacaa----aaattaacatgagaacatcaacattattctagc |
48757282 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 10227513 - 10227658
Alignment:
| Q |
28 |
atataatatgtgaagttcatggtggaccccatataaaataaattaagaacttaaatgcattgtagtgaaaatgagaaaaattctt-gaattctatgtggc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||| ||||| || ||||||||||| |
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|
| T |
10227513 |
atataatatgtgaagttcatggtggaccccatataaaacaaactaagaacttaaatgcattgcagtgaaaatgatgaaagttcttagagttctatgtggc |
10227612 |
T |
|
| Q |
127 |
aattattggcccacaaaaataaattaacttgagaacatcaacattgttct |
176 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
10227613 |
aattattggcccacaaaaat----tacattgagaacatcaatattgttct |
10227658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 43974999 - 43974831
Alignment:
| Q |
9 |
aagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaataaattaagaacttaaatgc-attgtagtgaaaatga-gaaaa |
106 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||| |||||||||||||||| | | |
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|
| T |
43974999 |
aagaggaaagaaaaagaaaatata---tgtgaagttcatggtggacgccgtataaaacaaattaagaacttaaatgcaattgtagtgaaaatgagggagt |
43974903 |
T |
|
| Q |
107 |
attcttgaattcta--tgtggcaattattggcccacaaaaataaattaacttgagaacatc-aacattgttctagc |
179 |
Q |
| |
|
||||| ||| ||| ||||| ||||| |||||||||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
43974902 |
gttcttaaatcctatgtgtggtaattagtggcccacaa----aaattaacttgagaatatcaaacattgttctagc |
43974831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 33493554 - 33493464
Alignment:
| Q |
79 |
taaatgcattgtagtgaaaatga-gaaaaattcttgaattctatgtggcaattattggcccacaaaaataaattaacttgagaacatcaacattg |
172 |
Q |
| |
|
|||||| |||||||||||||||| | | ||||| ||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33493554 |
taaatgtattgtagtgaaaatgatggattgttcttcaatcctaagtggcaattaatggcccacaaaaat----taacttgagaacatcaacattg |
33493464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 42654083 - 42654199
Alignment:
| Q |
8 |
gaagaggaaaggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaataaattaagaacttaaatgcattgtagtgaaaatgagaaaaa |
107 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||| |||||||| |||||||||| ||| || |||||||||| |||||||| ||||||| |||| |
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|
| T |
42654083 |
gaagagggaaggaaatgaatatataatatgtgaagtttatggtggatcccatataaatcaaactacaaacttaaatgtattgtagtaaaaatgataaaag |
42654182 |
T |
|
| Q |
108 |
ttcttgaattctatgtg |
124 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
42654183 |
ttcttgaattctatgtg |
42654199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 40701305 - 40701215
Alignment:
| Q |
77 |
cttaaatgcattgtagtgaaaatgagaaaaattcttgaattctatgtggcaattattggcccacaaaaataaattaacttgagaacatcaacatt |
171 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| || |||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
40701305 |
cttaaatgcattttagtgaaaatgaggaaagtttttgaatcctatgtggtaattattggcccacaa----aaattaacttgagaacattaacatt |
40701215 |
T |
|
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