View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_13 (Length: 407)
Name: NF11092_low_13
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 36798512 - 36798898
Alignment:
| Q |
20 |
taaatgagtttttgactgatttaaaaattgatttgtgaaaagttgttaaaccactagtcgttaatgttagcgatcaatttcacatttctaccactgaatg |
119 |
Q |
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| T |
36798512 |
taaatgagtttttgactgatttaaaaattgatttgtgaaaagttgttaaaccactagtcgttaatgttagcgatcaatttcacatttctaccactgaatg |
36798611 |
T |
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| Q |
120 |
atcgttaaatcggctaccgaa---------tcttatcatccatggttacaacaaacatcctaactcaataaagatttatcctaaaaccaattgttgtgtt |
210 |
Q |
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| T |
36798612 |
atcgttaaatcggccaccgaaaagaaacaatcttatcatccatggttacaacaaacatcctaactcaataaagatttatcctaaaaccaattgttgtgtt |
36798711 |
T |
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| Q |
211 |
tactgctgcaaaaatcaacacgatcattgttgcatttgatgttgccttgttatcacactatgtggacctgctcatctgtcgcaacatctttctattaaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36798712 |
tactgctgcaaaaatcaacacgatcattgttgcatttgatgttgccttgttatcacactatgtggacctgctcatctgtcgcaacatctttctattaaga |
36798811 |
T |
|
| Q |
311 |
agctaccaatatgtgagtgtgaaaaatatgacataatttaaacatgcatatatgtattttatgcatgtactttagttaaggcctttg |
397 |
Q |
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| T |
36798812 |
agctaccaatatgtgagtgtgaaaaatatgacataatttaaacatgcatatatgtattttatgcatgtactttagttaaggcctttg |
36798898 |
T |
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