View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_17 (Length: 382)
Name: NF11092_low_17
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 44287539 - 44287894
Alignment:
| Q |
9 |
aatgaagggaatcaaaagctgtattggaccttttagttaaaatataataaactatatatagacaagaattgcgactgattaatttacagatgccttcaag |
108 |
Q |
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| T |
44287539 |
aatgaagggaatcaaaagctgtattggaccttttagttaaaatataataaactata----gtcaagaattgcgactgatttatttacagatgccttcaag |
44287634 |
T |
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| Q |
109 |
gttgcacccc-caccacgcacgaacagcactctactatgaatcaacatcacaaagtaagaaagtagagtttaaagccttatccttttttgcttacaatgt |
207 |
Q |
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| T |
44287635 |
gttgcaccccccaccacgcacgaacagcactctactatgaatcaacatcacacagtaagaaagtagagtttaaagccttatccttttttgcttacaatgt |
44287734 |
T |
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| Q |
208 |
atcgggtaaccagccaaactatatataggtatcaaagaatttcctttannnnnnncatatataaaagaatattgcacatgttagaagttagacaaaccct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
44287735 |
atcgggtaaccagccaaactatatataggtatcaaagaatttcctttatttttttcatacataaaagaatattacacatgttagaagttagacaaaccct |
44287834 |
T |
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| Q |
308 |
aaaatgatttaatgatggtataaagggtactcgaacccataataaaagttggttctaaat |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44287835 |
aaaatgatttaatgatggtataaagggtactcgaacccataataaaagttggttctaaat |
44287894 |
T |
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