View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_22 (Length: 351)
Name: NF11092_low_22
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 30246078 - 30245755
Alignment:
| Q |
19 |
agcttagctctgcctctgccctcagtttgattttgaacaagttcttgttgattaattccatgtgttcccttcttggcaagggttctacaataacttttcc |
118 |
Q |
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| T |
30246078 |
agcttagctctgcctctgccctcagtttaattttgaacaagttcttgttgattaattccatgtgttcccttcttggcaagggttctacaataacttttcc |
30245979 |
T |
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| Q |
119 |
atgatacttattgcttattttgagctgcccattttctctctataccaaannnnnnnnn-aaagcagcaaaacttcattagaataaataaacagacaaaag |
217 |
Q |
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| T |
30245978 |
atgatacttattgcttattttgagctgcccattttctatctataccaatttttttttttaaagcagcaaaacttcattagaataaataaacagacaaaag |
30245879 |
T |
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| Q |
218 |
ctcaagaattaattttgaatcagtacatcgcatcagaatatttcgcttatacttgcaagatatttcaagctgggtgcctgcccttgtaagacacaagaag |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30245878 |
ctcgagaattaattttgaatcagtacatcgcatcagaatatttcgcttatacttgcaagatatttcaaggtgggtgcctgcccttgtaagacacaagaat |
30245779 |
T |
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| Q |
318 |
tttcttaagtgagttgatcctatg |
341 |
Q |
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|||||||||||||||||||||||| |
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| T |
30245778 |
tttcttaagtgagttgatcctatg |
30245755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 30782869 - 30782777
Alignment:
| Q |
249 |
atcagaatatttcgcttatacttgcaagatatttcaagctgggtgc--ctgcccttgtaagacacaagaagtttcttaagtgagttgatccta |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| || ||||||||| | |||||||||| |
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| T |
30782869 |
atcagaatatttcgcttatacttgcaagatatttcaaggtgggtgcctctgcccttgtaaaacacaacaattttcttaagggggttgatccta |
30782777 |
T |
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