View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_23 (Length: 349)
Name: NF11092_low_23
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 120 - 339
Target Start/End: Complemental strand, 4559390 - 4559171
Alignment:
| Q |
120 |
gcatatgaagattttccnnnnnnnngactaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgtta |
219 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4559390 |
gcatatgaagattttccttttttttgactaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgtta |
4559291 |
T |
|
| Q |
220 |
gatatagtttcagatttgttaaaattagtttgatatttttcaagatagttataagttagttattattagatgcaagttggttacattagggatcttagat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4559290 |
gatatagtttcagatttgttaaaattagtttgatatttttcaagatagttataagttagttatgattagatgcaagttggttacattagggatcttagat |
4559191 |
T |
|
| Q |
320 |
aagcctagtcagaccctatg |
339 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
4559190 |
aagcctagtcagaccctatg |
4559171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4559532 - 4559418
Alignment:
| Q |
1 |
attataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacacttactagaataaaagtgtcatctag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4559532 |
attataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacacttacttgaataaaagtgtcatctag |
4559433 |
T |
|
| Q |
101 |
ttcaattttgaaact |
115 |
Q |
| |
|
||||||||||||||| |
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| T |
4559432 |
ttcaattttgaaact |
4559418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 150 - 287
Target Start/End: Complemental strand, 4573267 - 4573130
Alignment:
| Q |
150 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttaaaattagtt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
4573267 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcatatttgttgaaattagtt |
4573168 |
T |
|
| Q |
250 |
tgatatttttcaagatagttataagttagttattatta |
287 |
Q |
| |
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| |||| || |||||||||||||||||||||| |||| |
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| T |
4573167 |
tagtattgtttaagatagttataagttagttatgatta |
4573130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 4566253 - 4566133
Alignment:
| Q |
150 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttaaaattagtt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
4566253 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatgtagtttcagatttgttaaaattagtt |
4566154 |
T |
|
| Q |
250 |
tgatatttttcaagatagtta |
270 |
Q |
| |
|
| ||||||| |||||||||| |
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|
| T |
4566153 |
taatattttggaagatagtta |
4566133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4566390 - 4566276
Alignment:
| Q |
1 |
attataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacacttactagaataaaagtgtcatctag |
100 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| | ||||| |
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| T |
4566390 |
attataaaataaataagtggacataattattttctttgtacaacaaaaatctttgatgtcagaactatcttatacttacttgaatagaagtgccttctag |
4566291 |
T |
|
| Q |
101 |
ttcaattttgaaact |
115 |
Q |
| |
|
||||||||||||||| |
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|
| T |
4566290 |
ttcaattttgaaact |
4566276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4573404 - 4573290
Alignment:
| Q |
1 |
attataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacacttactagaataaaagtgtcatctag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||| ||||||| ||||| |
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|
| T |
4573404 |
attataaaataaataagtggtcataattattttctttgtacaacaaaaatctttgatgtcagaactatatatcttatacttgaatagaagtgtcttctag |
4573305 |
T |
|
| Q |
101 |
ttcaattttgaaact |
115 |
Q |
| |
|
||||||||||||||| |
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|
| T |
4573304 |
ttcaattttgaaact |
4573290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 4615237 - 4615168
Alignment:
| Q |
166 |
tgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
236 |
Q |
| |
|
|||||||| ||||||| | |||||||||||| ||| ||||||| |||| | ||||||||||||| |||||| |
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| T |
4615237 |
tgtttgatgatatcttcc-actgaatggttggaatgccatgcatgtattttttagatatagtttgagattt |
4615168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 4591438 - 4591385
Alignment:
| Q |
223 |
atagtttcagatttgttaaaattagtttgatatttttcaagatagttataagtt |
276 |
Q |
| |
|
||||||| | |||||||| ||||||||| |||||||| | |||||||||||||| |
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|
| T |
4591438 |
atagtttgatatttgttagaattagtttcatattttttaggatagttataagtt |
4591385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 16684943 - 16685033
Alignment:
| Q |
146 |
actaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16684943 |
actaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
16685033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 16684776 - 16684881
Alignment:
| Q |
4 |
ataaaataaataagtggtcatgattattttctttgtacaacaaaaatctttgatgtcagaactatcttacact--tactagaataaaagtgtcatctagt |
101 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||| |||| | ||||| ||| |||| ||||| ||||||| |||||| |
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|
| T |
16684776 |
ataaaataaataagtggacataattattttctttgtacaacaaaagtgtttgatgtgagaagtgtcttatacttgtactggaatacaagtgtcttctagt |
16684875 |
T |
|
| Q |
102 |
tcaatt |
107 |
Q |
| |
|
|||||| |
|
|
| T |
16684876 |
tcaatt |
16684881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 37214216 - 37214283
Alignment:
| Q |
215 |
tgttagatatagtttcagatttgttaaaattagtttgatatttttcaagatagttataagttagttat |
282 |
Q |
| |
|
||||||| ||||||| | |||||||| |||||||| |||||| || ||| |||||| ||||||||||| |
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|
| T |
37214216 |
tgttagagatagtttgatatttgttagaattagttggatattgtttaaggtagttaaaagttagttat |
37214283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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