View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11092_low_25 (Length: 338)

Name: NF11092_low_25
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11092_low_25
NF11092_low_25
[»] chr2 (4 HSPs)
chr2 (18-327)||(37362827-37363136)
chr2 (176-236)||(24583632-24583693)
chr2 (247-325)||(26670901-26670980)
chr2 (247-314)||(23915763-23915830)
[»] chr8 (8 HSPs)
chr8 (247-325)||(17491724-17491803)
chr8 (247-323)||(18737208-18737284)
chr8 (247-323)||(18742093-18742169)
chr8 (247-323)||(18747057-18747133)
chr8 (247-316)||(35914671-35914740)
chr8 (247-325)||(45512564-45512644)
chr8 (247-317)||(33511497-33511567)
chr8 (247-311)||(14459043-14459107)
[»] scaffold0491 (1 HSPs)
scaffold0491 (247-323)||(3898-3974)
[»] chr4 (5 HSPs)
chr4 (247-325)||(53540423-53540502)
chr4 (247-316)||(47612536-47612605)
chr4 (293-329)||(38903834-38903870)
chr4 (178-237)||(15661875-15661935)
chr4 (266-325)||(49987541-49987601)
[»] chr6 (4 HSPs)
chr6 (247-316)||(547137-547206)
chr6 (206-325)||(31818664-31818781)
chr6 (247-329)||(8364685-8364768)
chr6 (247-316)||(12222210-12222279)
[»] chr7 (4 HSPs)
chr7 (247-329)||(38135283-38135366)
chr7 (176-237)||(42187660-42187722)
chr7 (266-326)||(21517469-21517530)
chr7 (176-236)||(38900177-38900237)
[»] chr3 (4 HSPs)
chr3 (247-325)||(54365045-54365124)
chr3 (252-316)||(33755417-33755481)
chr3 (265-324)||(34844661-34844721)
chr3 (293-325)||(11284126-11284158)
[»] scaffold0050 (1 HSPs)
scaffold0050 (205-325)||(58257-58375)
[»] chr5 (1 HSPs)
chr5 (294-325)||(32516689-32516720)
[»] chr1 (3 HSPs)
chr1 (265-325)||(8203222-8203283)
chr1 (176-237)||(8796428-8796490)
chr1 (176-237)||(21769712-21769774)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 37362827 - 37363136
Alignment:
Q  18 gtgagttcttttccaagcgatagaaggttaggcgagtgctattttagtcgaatgagtgtcagccgattctttctcgagtttattgattaatatgtaggtc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  37362827 gtgagttcttttccaagcgatagaaggttaggcgagtgctattttagtcgaatgagtgtcagccgattctttttcgagtttattgattagtatgtaggtc 37362926  T
Q  118 ttgaagacattaaactcagtcaaagttcgataaaaccgggcaatgaggtatgagaccccaacaacaacaaaaccttatcacattaagtgggtcggctaca 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37362927 ttgaagacattaaactcagtcaaagttcgatagaaccgggcaatgaggtatgagaccccaacaacaacaaaaccttatcacattaagtgggtcggctaca 37363026  T
Q  218 ttgattaaattacgacataannnnnnnnnatcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagtttttt 317  Q
    ||||||||||||||||||||         |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37363027 ttgattaaattacgacataatttttttttatcataaatcatactttagtctaactcattaatctcctagttttgtttaatagtttctcttatagtttttt 37363126  T
Q  318 aggtcttcat 327  Q
    ||||||||||    
T  37363127 aggtcttcat 37363136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 24583632 - 24583693
Alignment:
Q  176 caacaacaacaaaaccttatcacattaagtggg-tcggctacattgattaaattacgacata 236  Q
    |||||||||| || ||||||| ||||||||||| ||||| ||||||||||||||||| ||||    
T  24583632 caacaacaaccaagccttatctcattaagtggggtcggcaacattgattaaattacgtcata 24583693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 26670980 - 26670901
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt-taggtcttc 325  Q
    |||||||| |||| ||| ||||||||||||||||||  | | ||  |||||||||||| ||||||||||| |||||||||    
T  26670980 atcataaatcatattttggtccaactcattaatctctaaatctttcttaatagtttcttttatagtttttgtaggtcttc 26670901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 23915763 - 23915830
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgt-ttaatagtttctcttatagttt 314  Q
    ||||||||||||| ||  ||||| |||||||||||| ||| ||| | ||||||||||||||||||||||    
T  23915763 atcataaaccatagttctgtccacctcattaatctc-tagatttttcttaatagtttctcttatagttt 23915830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 17491724 - 17491803
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt-taggtcttc 325  Q
    ||||||||||||| ||| ||||||||||||||||||| ||| ||  |||||||||||||||| ||||||| |||||||||    
T  17491724 atcataaaccatattttggtccaactcattaatctccaagtctttcttaatagtttctcttacagtttttctaggtcttc 17491803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 18737208 - 18737284
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttttaggtct 323  Q
    ||||||||||||| |||| ||||||||||||||||  |  ||||  | |||||||||||||||||||||||||||||    
T  18737208 atcataaaccatattttaatccaactcattaatctaatgatttttctaaatagtttctcttatagttttttaggtct 18737284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 18742093 - 18742169
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttttaggtct 323  Q
    ||||||||||||| |||| ||||||||||||||||  |  ||||  | |||||||||||||||||||||||||||||    
T  18742093 atcataaaccatattttaatccaactcattaatctaatgatttttctaaatagtttctcttatagttttttaggtct 18742169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 18747057 - 18747133
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttttaggtct 323  Q
    ||||||||||||| |||| ||||||||||||||||  |  ||||  | |||||||||||||||||||||||||||||    
T  18747057 atcataaaccatattttaatccaactcattaatctaatgatttttctaaatagtttctcttatagttttttaggtct 18747133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 35914671 - 35914740
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt 316  Q
    ||||||||||||| ||| ||||||||||||||||| | ||| ||   |||||||||||||||||||||||    
T  35914671 atcataaaccatattttggtccaactcattaatcttcaagtctttcctaatagtttctcttatagttttt 35914740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 45512564 - 45512644
Alignment:
Q  247 atcataaaccatactttag-tccaactcattaatctcctagttttgtttaatagtttctcttatagttttt-taggtcttc 325  Q
    ||||||||||||| ||| | || ||||||||||||||| ||| ||   ||||||||||||||||||||||| |||||||||    
T  45512564 atcataaaccatattttggatcgaactcattaatctccaagtctttcctaatagtttctcttatagtttttctaggtcttc 45512644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 33511567 - 33511497
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagtttttt 317  Q
    ||||| ||||||| ||| |||||| |||||||||| | ||| ||   ||||||||||||||||||||||||    
T  33511567 atcatgaaccatattttggtccaagtcattaatcttcaagtatttcctaatagtttctcttatagtttttt 33511497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 14459107 - 14459043
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatag 311  Q
    ||||||||||||| ||| ||| ||||||||||||||| | | ||   ||||||||||||||||||    
T  14459107 atcataaaccatattttggtctaactcattaatctccaaatctttcctaatagtttctcttatag 14459043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 3898 - 3974
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttttaggtct 323  Q
    ||||||||||||| |||| ||||||||||||||||  |  ||||  | |||||||||||||||||||||||||||||    
T  3898 atcataaaccatattttaatccaactcattaatctaatgatttttctaaatagtttctcttatagttttttaggtct 3974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 53540502 - 53540423
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt-taggtcttc 325  Q
    ||||||||||||| ||| ||||||||||||||||||| ||| ||   ||||||||| ||||||||||||| |||||||||    
T  53540502 atcataaaccatatttttgtccaactcattaatctccaagtctttcctaatagtttatcttatagtttttctaggtcttc 53540423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 47612605 - 47612536
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt 316  Q
    ||||||||||||| ||| ||||| ||||||||||||| ||| || | |||||||||||||| ||||||||    
T  47612605 atcataaaccatattttggtccacctcattaatctccaagtcttatctaatagtttctcttctagttttt 47612536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 38903834 - 38903870
Alignment:
Q  293 ttaatagtttctcttatagttttttaggtcttcatct 329  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38903834 ttaatagtttctcttatagttttctaggtcttcatct 38903870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 15661875 - 15661935
Alignment:
Q  178 acaacaacaaaaccttatcacattaagtggg-tcggctacattgattaaattacgacataa 237  Q
    |||||||| |||||||||| || |||||||| |||||||||| ||| |||||||| |||||    
T  15661875 acaacaaccaaaccttatcccactaagtggggtcggctacatggatcaaattacgccataa 15661935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 49987601 - 49987541
Alignment:
Q  266 tccaactcattaatctcctagttttgtttaatagtttctcttatagttttt-taggtcttc 325  Q
    |||| |||||| |||||| ||| ||  |||||||||||||||||||||||| |||||||||    
T  49987601 tccatctcatttatctccaagtctttcttaatagtttctcttatagtttttctaggtcttc 49987541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 547206 - 547137
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt 316  Q
    |||||| |||||| ||||||||||||||||||| |   | |||||||||||||||||||| |||||||||    
T  547206 atcatacaccataatttagtccaactcattaatttttaaattttgtttaatagtttctctaatagttttt 547137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 325
Target Start/End: Complemental strand, 31818781 - 31818664
Alignment:
Q  206 gggtcggctacattgattaaattacgacataannnnnnnnnatcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctc 305  Q
    ||||||||||||| ||| ||||||||||||||         |||||||||||||||||  |||||||||||||||||| |   ||   ||||||||||||    
T  31818781 gggtcggctacatggatcaaattacgacataatgttct---atcataaaccatactttgatccaactcattaatctccaaacctttcctaatagtttctc 31818685  T
Q  306 ttatagttttt-taggtcttc 325  Q
    ||||||||||| |||||||||    
T  31818684 ttatagtttttctaggtcttc 31818664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 8364768 - 8364685
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagtt-ttttaggtcttcatct 329  Q
    ||||||||||||  || ||||||||| |||||| ||  | | ||  ||||||||||||||||||||| ||||||||||||||||    
T  8364768 atcataaaccatgtttcagtccaacttattaatttctaaatctttcttaatagtttctcttatagtttttttaggtcttcatct 8364685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 12222210 - 12222279
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt 316  Q
    ||||||||||| | ||| |||||| |||||||||||| ||||||   |||||| || |||||||||||||    
T  12222210 atcataaaccaaattttggtccaattcattaatctccaagtttttcctaataggttttcttatagttttt 12222279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 38135283 - 38135366
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt-taggtcttcatct 329  Q
    ||||||| ||||| ||  ||||||||||||||||||  | | || ||||||||||||||||||| ||||| |||||||||||||    
T  38135283 atcataacccatatttcggtccaactcattaatctctaaatcttttttaatagtttctcttatactttttctaggtcttcatct 38135366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 42187722 - 42187660
Alignment:
Q  176 caacaacaacaaaaccttatcacattaagt-gggtcggctacattgattaaattacgacataa 237  Q
    ||||||||||||| ||||||| || ||||| ||||||||||||| ||| |||||||| |||||    
T  42187722 caacaacaacaaagccttatcccactaagtggggtcggctacatggatcaaattacgccataa 42187660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 21517469 - 21517530
Alignment:
Q  266 tccaactcattaatctcctagttttgtttaatagtttctcttatagttttt-taggtcttca 326  Q
    ||||||| |||||||||  | | || ||||||||||||||||||||||||| ||||||||||    
T  21517469 tccaacttattaatctctaaatattttttaatagtttctcttatagtttttctaggtcttca 21517530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 38900237 - 38900177
Alignment:
Q  176 caacaacaacaaaaccttatcacattaagtgggtcggctacattgattaaattacgacata 236  Q
    |||||||||| || ||||||| || |||||||||||||||||| ||| |||| ||| ||||    
T  38900237 caacaacaaccaagccttatcccactaagtgggtcggctacatggatcaaatgacgccata 38900177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 54365045 - 54365124
Alignment:
Q  247 atcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt-taggtcttc 325  Q
    ||||||||||||| ||| ||| ||| ||||||||||| ||| ||   ||||||||||||||||||||||| |||||||||    
T  54365045 atcataaaccatattttggtctaacacattaatctccaagtctttcctaatagtttctcttatagtttttctaggtcttc 54365124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 33755417 - 33755481
Alignment:
Q  252 aaaccatactttagtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt 316  Q
    ||||||||  || ||||||||||||||||||  ||||||   |||||||||||||||||||||||    
T  33755417 aaaccatatcttggtccaactcattaatctctaagtttttcctaatagtttctcttatagttttt 33755481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 34844661 - 34844721
Alignment:
Q  265 gtccaactcattaatctcctagttttgtttaatagtttctcttatagttttt-taggtctt 324  Q
    ||||| ||||||||||||| ||||||   ||||||||||||||||||||||| ||||||||    
T  34844661 gtccacctcattaatctccaagtttttcctaatagtttctcttatagtttttctaggtctt 34844721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 11284158 - 11284126
Alignment:
Q  293 ttaatagtttctcttatagttttttaggtcttc 325  Q
    ||||||||||||||||||||||| |||||||||    
T  11284158 ttaatagtttctcttatagttttctaggtcttc 11284126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 325
Target Start/End: Original strand, 58257 - 58375
Alignment:
Q  205 tgggtcggctacattgattaaattacgacataannnnnnnnnatcataaaccatactttagtccaactcattaatctcctagttttgtttaatagtttct 304  Q
    |||||||||||||| ||| ||||||||||||||         |||||||||||||  || |||||||||||| |||||| ||||||   ||| |||||||    
T  58257 tgggtcggctacatggatcaaattacgacataatgttct---atcataaaccatatcttggtccaactcattgatctccaagtttttcctaacagtttct 58353  T
Q  305 cttatagttttt-taggtcttc 325  Q
    ||||| |||||| |||||||||    
T  58354 cttatcgtttttctaggtcttc 58375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 325
Target Start/End: Complemental strand, 32516720 - 32516689
Alignment:
Q  294 taatagtttctcttatagttttttaggtcttc 325  Q
    ||||||||||||||||||||||||||||||||    
T  32516720 taatagtttctcttatagttttttaggtcttc 32516689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 8203222 - 8203283
Alignment:
Q  265 gtccaactcattaatctcctagtt-ttgtttaatagtttctcttatagttttt-taggtcttc 325  Q
    |||||||||||||||||| ||| | || ||||||||||||||||||||||||| |||||||||    
T  8203222 gtccaactcattaatctc-tagatcttttttaatagtttctcttatagtttttctaggtcttc 8203283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 8796490 - 8796428
Alignment:
Q  176 caacaacaacaaaaccttatcacattaagtggg-tcggctacattgattaaattacgacataa 237  Q
    |||||||||| || ||||||| || |||||||| |||||||||| |||||||||||| |||||    
T  8796490 caacaacaaccaagccttatcccactaagtggggtcggctacatggattaaattacgccataa 8796428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 21769712 - 21769774
Alignment:
Q  176 caacaacaacaaaaccttatcacattaagtggg-tcggctacattgattaaattacgacataa 237  Q
    |||||||||| || |||||||||| |||||||| |||||||||| ||| |||||||| |||||    
T  21769712 caacaacaaccaagccttatcacactaagtggggtcggctacatggatcaaattacgccataa 21769774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University