View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11092_low_28 (Length: 327)
Name: NF11092_low_28
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 35940659 - 35940954
Alignment:
| Q |
16 |
cctgtgtggttcaaacattatgttgtcgtaatcaaatttgttaaacttgagaggctaggtaaactttttgagcttctgtagactcaaatcataaacttgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35940659 |
cctgtgtggttcaaacattatgttgtcgtaatcgaatttgttaaacttgagaggctaggtaaactttttgagcttctgtagactcaaatcataaacttgt |
35940758 |
T |
|
| Q |
116 |
tagtgaaatttgttaaaacttttcgagcctaggtaaacttttcaccactactatgaaaatgaagttatgtcatcaatcaaatattaactgataatctata |
215 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35940759 |
tagtgaaatttgttaaa-ctttttgagcctaggtaaacttttcaccactactatgaatatgaagttatgtcatcaatcaaatattaactgataatctata |
35940857 |
T |
|
| Q |
216 |
aattcttcttatcttgtgtggtgttgtaaatttacttactaatgtaaatgtagttgcaatattcaggtctttgcaatcacatggtaactatattcct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35940858 |
aattcttcttatcttgtgtggtgttgtaaatttacttactaatgcaaatgtagttgcaatattcaggtctttgcaatcacatggtaactatattcct |
35940954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 35915690 - 35915785
Alignment:
| Q |
161 |
cactactatgaaaatgaagttatgtcatcaatcaaatattaactgataatc----tataaattcttcttatcttgtgtggtgttgtaaatttactta |
253 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||| ||||| ||||||||| || |||||| |||| |
|
|
| T |
35915690 |
cactactatgaaaatgtagttatgtcatcaatcaaata-taactaataatctatatataaattctttttatcgtgtgtggtgatgcaaattttctta |
35915785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 35935223 - 35935318
Alignment:
| Q |
161 |
cactactatgaaaatgaagttatgtcatcaatcaaatattaactgataatctataaattcttcttatcttgtgtggtgttgtaaatttacttacta |
256 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||| ||||| | ||||| || ||| ||||||||| ||| |||||||||| ||| ||||||| |
|
|
| T |
35935223 |
cactactatgaaaatgaagttatgttatcgatcaaacattaagtagtaatcgatcaatacttcttatcatgtctggtgttgtatattggcttacta |
35935318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 35928667 - 35928716
Alignment:
| Q |
162 |
actactatgaaaatgaagttatgtcatcaatc-aaatattaactgataat |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
35928667 |
actactatgaaaatcaagttatgtcatcaatcaaaatattaactaataat |
35928716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 35935090 - 35935198
Alignment:
| Q |
16 |
cctgtgtggttcaaacattatgttgtcgtaatcaaatttgttaaacttgagaggctaggtaaactttttgagcttctgtagactcaaatcataaacttgt |
115 |
Q |
| |
|
|||||||| |||||| |||||||| || ||||||||| | ||||| |||| |||||||||| | | ||||||||||||||| | ||||| |||||| |
|
|
| T |
35935090 |
cctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgactcatatacttgt |
35935189 |
T |
|
| Q |
116 |
tagtgaaat |
124 |
Q |
| |
|
|||| |||| |
|
|
| T |
35935190 |
tagtaaaat |
35935198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 35921722 - 35921764
Alignment:
| Q |
58 |
aaacttgagaggctaggtaaactttttgagcttctgtagactc |
100 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
35921722 |
aaacttgagagtctaagtaaacttgttgagcttctgtagactc |
35921764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 35922051 - 35922085
Alignment:
| Q |
161 |
cactactatgaaaatgaagttatgtcatcaatcaa |
195 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
35922051 |
cactactatgaaaatgaacttatgtcatcaatcaa |
35922085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University