View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_29 (Length: 324)
Name: NF11092_low_29
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 57 - 309
Target Start/End: Original strand, 45082180 - 45082432
Alignment:
| Q |
57 |
aacatgaccagctcaattgtgatcccaaacacgtaactatcattatcaaataaaaagtaacacgagttcaatttattccaagactagtgcaaacacatta |
156 |
Q |
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| T |
45082180 |
aacatgaccagctcaattgtgatcccaaacacataactatcattatcaaataaaaagtaacacgagtccaatttattccaagactagtgcaaacacatta |
45082279 |
T |
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| Q |
157 |
ctggacagtttatcacacactacaaagacattattatcaaaataaaattttataagttaatggacaaaaataagttaaagggaaaattggagttatgtag |
256 |
Q |
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| T |
45082280 |
ctggacagtttatcacacactacaaagacattattatcaaaataaaattttataagttaatggacaaaaataagttaaagggaaaattggagttatgcag |
45082379 |
T |
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| Q |
257 |
taacggaatttctcacataggtgaaggaaattgatgagaagaaggtgaaattc |
309 |
Q |
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| T |
45082380 |
taacggaatttctcacataggtaaaggaaattgatgagaagaagatgaaattc |
45082432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 45082149 - 45082179
Alignment:
| Q |
1 |
tcctgttgtgccactgagacctgtcatgatt |
31 |
Q |
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| T |
45082149 |
tcctgttgtgccactgagacctgtcatgatt |
45082179 |
T |
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