View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_31 (Length: 319)
Name: NF11092_low_31
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 8909112 - 8908812
Alignment:
| Q |
1 |
attaatatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909112 |
attaatatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagt |
8909013 |
T |
|
| Q |
101 |
gctctttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909012 |
gctctttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgc |
8908913 |
T |
|
| Q |
201 |
aacaagtgcttatgctgaaaatcactactgcgttttctgatgctagtctttctattctctctaatgggtcacacatcattgttggggtcatgtggtagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8908912 |
aacaagtgcttatgctgaaaatcactactgcgttttctgatgctagtctttctattctctctaatgggtcacacatcattgttggggtcatgtggtagtt |
8908813 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
8908812 |
t |
8908812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7300320 - 7300096
Alignment:
| Q |
1 |
attaatatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagt |
100 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||| ||||| | ||||| | ||||| | | |
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| T |
7300320 |
attaatatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaaccggaagtgatgttgaatttccaagtaacctcatcaat |
7300221 |
T |
|
| Q |
101 |
gctctttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgc |
200 |
Q |
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| T |
7300220 |
actcttttcatttctttccctttaggatcttcatcaacttcatgaaccattgcattcactcccattccacagaacaaactcttcattgcatgacacatac |
7300121 |
T |
|
| Q |
201 |
aacaagtgcttatgctgaaaatcac |
225 |
Q |
| |
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| ||| | ||||||||||| ||||| |
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| T |
7300120 |
agcaactacttatgctgaatatcac |
7300096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7333355 - 7333579
Alignment:
| Q |
1 |
attaatatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagt |
100 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||| ||||| | ||||| | ||||| | | |
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|
| T |
7333355 |
attaatatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaat |
7333454 |
T |
|
| Q |
101 |
gctctttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgc |
200 |
Q |
| |
|
||||||| | || ||| ||| | ||||||||||||| ||||||||| || |||||||||||||||||||||||| ||||| || ||||| ||||| | |
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|
| T |
7333455 |
gctcttttcatttgtttccctttaggatcttcatcaacttcatgaaccattgcattcactcccattccacagaacaaactcttcattgcatggcacatac |
7333554 |
T |
|
| Q |
201 |
aacaagtgcttatgctgaaaatcac |
225 |
Q |
| |
|
||||| | ||||||||||| ||||| |
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|
| T |
7333555 |
aacaactacttatgctgaatatcac |
7333579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 7340148 - 7340368
Alignment:
| Q |
5 |
atatgacaagccatgactctatccatagtaccaataagtttaccaccaatgaaaacaacaggaacaacatttgaagtaccaagaagtctcataagtgctc |
104 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||| ||||| | ||||| | ||||| | ||||| |
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| T |
7340148 |
atatgaaaagccaaaactctatccatagaaccaactaatttcccaccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatgctc |
7340247 |
T |
|
| Q |
105 |
tttcaagttctttgcctcttggatcttcatcaagttcatgaacagctggattcactcccattccacagaacaatctcttgatagcatgacacatgcaaca |
204 |
Q |
| |
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||| | |||||| ||| | ||||||||||||| ||||||||| || |||||||||||| ||||||||||| ||||| || ||||||||||| || || |
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| T |
7340248 |
ttttcatttctttccctttaggatcttcatcaacttcatgaaccattgcattcactcccataccacagaacaaactcttcattgcatgacacatacagca |
7340347 |
T |
|
| Q |
205 |
agtgcttatgctgaaaatcac |
225 |
Q |
| |
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| | ||||||||||| ||||| |
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|
| T |
7340348 |
actacttatgctgaatatcac |
7340368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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