View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11092_low_33 (Length: 308)
Name: NF11092_low_33
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 48 - 291
Target Start/End: Complemental strand, 10685622 - 10685380
Alignment:
| Q |
48 |
atatttgagtaaatgatcataatccaaaaataacagtcaactaaaatcatagacaaagagttacaaccttttacatcaaaagatcaaattttattgtgtc |
147 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10685622 |
atatttgagtaaatgatcataaaccaaaaatcacagtcaactaaaatcatagacaaagagttacaaccttttagatcaaaagatcaaattttattgtgtc |
10685523 |
T |
|
| Q |
148 |
attgacatccacacatgtaagagtcatcatcttaccttttattctgtctaatacacgtgtcactaaaagatatttctcactctttcaataaggaaaaatt |
247 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10685522 |
attgatatccacacatgtaagagtcatcatcttaccttttattctgtctaatacacgtgtcactaaaagatatttctcactctttcaataaggaaaaatt |
10685423 |
T |
|
| Q |
248 |
atatctacatatccaaataaaatttggggccaaaatataagcac |
291 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10685422 |
atatctacatatccaaat-aaatttggggccaaaatataagcac |
10685380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University