View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11092_low_37 (Length: 302)

Name: NF11092_low_37
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11092_low_37
NF11092_low_37
[»] chr1 (1 HSPs)
chr1 (1-294)||(50089369-50089662)
[»] chr8 (2 HSPs)
chr8 (45-128)||(295644-295727)
chr8 (45-128)||(154388-154471)
[»] chr4 (4 HSPs)
chr4 (45-120)||(32713952-32714027)
chr4 (45-128)||(11063979-11064062)
chr4 (45-123)||(5234361-5234439)
chr4 (47-123)||(30037308-30037384)
[»] chr6 (3 HSPs)
chr6 (53-123)||(12187049-12187119)
chr6 (45-128)||(10387707-10387790)
chr6 (44-128)||(2340496-2340580)
[»] chr2 (1 HSPs)
chr2 (54-123)||(12550190-12550259)
[»] chr7 (1 HSPs)
chr7 (59-123)||(21624408-21624472)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 50089662 - 50089369
Alignment:
Q  1 gacttttttctactatgttttagggtgaagccatttttcaaataagtagtgttatttgaacaaccatttaagataagtttaatgataattttccttttct 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| |    
T  50089662 gacttttttctactatgttttagcgtgaagccatttttcaaataagtagtgttatttgaatgaccgtttaagataagtttaatgataattttcctttttt 50089563  T
Q  101 ctatttttattggtaaaaaacaacagagtaaacaacaaatattacgattgagaattatataagagaaatcacacaaataagttgaacaacacatccaaat 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50089562 ctttttttattggtaaaaaacaacagagtaaacaacaaatattacgattgagaatcatataagagaaatcacacaaataagttgaacaacacatccaaat 50089463  T
Q  201 aaaaaatcttaagacattggacttatgtctactcttgcttatatgttattcaactttctcatttccatgcaatgtgaaacttctaattcttctc 294  Q
     ||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50089462 caaaaatcttaagacattgtgcttatgtctgctcttgctgatatgttattcaactttctcatttccatgcaatgtgaaacttctaattcttctc 50089369  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 295727 - 295644
Alignment:
Q  45 agtagtgttatttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaacagag 128  Q
    |||||||||||||||||||| |||| |||||| |||  ||| |||||   ||||||||||||| |||||| |||||||| ||||    
T  295727 agtagtgttatttgaacaactatttgagataacttttgtgacaatttattttttctctattttcattggtcaaaaacaatagag 295644  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 154471 - 154388
Alignment:
Q  45 agtagtgttatttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaacagag 128  Q
    ||||||| |||||||||||||| |||||| || | |  ||| || |||| |||||||| ||||||||||| |||||||| ||||    
T  154471 agtagtgatatttgaacaaccaattaagacaactattgtgacaactttcattttctctctttttattggtcaaaaacaatagag 154388  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 32714027 - 32713952
Alignment:
Q  45 agtagtgttatttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaa 120  Q
    ||||||| |||||||||||| |||| |||||| |||  ||| ||||||| |||||||| ||||||||||| |||||    
T  32714027 agtagtgatatttgaacaacgatttgagataattttggtgacaattttcattttctctttttttattggtcaaaaa 32713952  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 11063979 - 11064062
Alignment:
Q  45 agtagtgttatttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaacagag 128  Q
    ||||||| ||||||||||||||||||||| || |||  ||| || |||| |||||| | ||||||| ||| |||||||| ||||    
T  11063979 agtagtgatatttgaacaaccatttaagacaactttggtgacaactttcattttctttctttttatcggtcaaaaacaatagag 11064062  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 5234361 - 5234439
Alignment:
Q  45 agtagtgttatttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaa 123  Q
    ||||||| ||||||||||||||||| | | || |||  ||| ||||||  |||||||| ||||||||||| ||||||||    
T  5234361 agtagtgatatttgaacaaccatttgatacaacttttgtgacaattttttttttctctctttttattggtcaaaaacaa 5234439  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 30037308 - 30037384
Alignment:
Q  47 tagtgttatttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaa 123  Q
    ||||| |||||||| || ||||||| |||| |||  ||| ||||||| |||| ||| ||||||||||| ||||||||    
T  30037308 tagtgatatttgaaaaatcatttaaaataatttttgtgacaattttctttttttctttttttattggtcaaaaacaa 30037384  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 12187119 - 12187049
Alignment:
Q  53 tatttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaa 123  Q
    ||||||||||||||||| | | ||  ||  ||||||||||| |||||||||||||||||| ||||||||||    
T  12187119 tatttgaacaaccatttgatacaatatttttgataattttcattttctctatttttattgataaaaaacaa 12187049  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 10387707 - 10387790
Alignment:
Q  45 agtagtgttatttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaacagag 128  Q
    |||| |||||||||||||| ||| | |||||| |||  |||||||||   |||||| | ||||||||||| |||||||||||||    
T  10387707 agtaatgttatttgaacaatcatatgagataacttttgtgataatttcttttttctatctttttattggtcaaaaacaacagag 10387790  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 2340580 - 2340496
Alignment:
Q  44 aagtagtgttatttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaacagag 128  Q
    |||||||| ||||| ||||| ||||| ||| || |||  | ||||||||| |||||||| |||||||||||  ||||||| ||||    
T  2340580 aagtagtgatatttaaacaatcatttgagacaacttttgtaataattttctttttctctctttttattggtcgaaaacaatagag 2340496  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 12550190 - 12550259
Alignment:
Q  54 atttgaacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaa 123  Q
    |||||||||||||||||||| || ||| |||| ||||| | |||| ||||||| ||||||| ||||||||    
T  12550190 atttgaacaaccatttaagacaactttgatgacaatttcctttttttctatttgtattggtcaaaaacaa 12550259  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 21624408 - 21624472
Alignment:
Q  59 aacaaccatttaagataagtttaatgataattttccttttctctatttttattggtaaaaaacaa 123  Q
    |||||||||||||||||| |||  |||||| || | |||||||| |||||||| |||||||||||    
T  21624408 aacaaccatttaagataatttttgtgataacttcctttttctctttttttattagtaaaaaacaa 21624472  T

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