View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_40 (Length: 286)
Name: NF11092_low_40
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 43143443 - 43143180
Alignment:
| Q |
3 |
cagagattggtgaataaaaagaaagaggtagatgtgtaccatatgatattcatagatgcagtaactccataaacttctagatggtaaatcaagagggtat |
102 |
Q |
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| T |
43143443 |
cagagattggagaataaaaagaaagaggtagatgtgtaccatatgatattcatagatgcagtaactccataaacttctagatggtaaatcaagagggtat |
43143344 |
T |
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| Q |
103 |
ccagtttgaataaatatctgtgaagcaccaaaacagttaaaaacataattcagataaatagaattattattattctcattaaacacctaactaaaaatat |
202 |
Q |
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| T |
43143343 |
ccagtttgaataaatatctgtgaagcaccaaaacagttaaaaacataattcagataaatagaattataattattctcattaaacacctaactaaaaatat |
43143244 |
T |
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| Q |
203 |
aacagaagaaacaaaattgaagtaacacctcggggttcttctccatctcacgagtgagcgctcc |
266 |
Q |
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| T |
43143243 |
aacagaagaaacaaaaatgaagtaacacctcagggttcttctccatctcacgagtgagcgctcc |
43143180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 270
Target Start/End: Complemental strand, 43155379 - 43155139
Alignment:
| Q |
26 |
agaggtagatgtgtaccatatgatattcatagatgcagtaactccataaacttctagatggtaaatcaagagggtatccagtttgaataaatatctgtga |
125 |
Q |
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| T |
43155379 |
agaggtagatgtgtaccatatgatattcatagatgcagtaactccctaaactgccagatggcaaatcaagagggtatccagtttgaataaatatctgtga |
43155280 |
T |
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| Q |
126 |
agcaccaaaacagttaaa-----aacataattcagataaatagaattattattattctcattaaacacctaactaaaaatataac-agaagaaacaaaat |
219 |
Q |
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| T |
43155279 |
aacatcaaaacagttaaaaccacaaaataattcaggttagaaga------attactctcattaaacgc----ctaaaattagaacaagaagaaacaaaat |
43155190 |
T |
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| Q |
220 |
tgaagtaacacctcggggttcttctccatctcacgagtgagcgctccaatt |
270 |
Q |
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| T |
43155189 |
caaagtaatacctcagggttcttctccatctcacgagtgagcgctccaatt |
43155139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 33834209 - 33834306
Alignment:
| Q |
26 |
agaggtagatgtgtaccatatgatattcatagatgcagtaactccataaacttctagatggtaaatcaagagggtatccagtttgaataaatatctgt |
123 |
Q |
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| T |
33834209 |
agaggtaggtgtgtaccatatggtattcatagatgcagtaactccctaaacttccagatggtaaatcaagaggatatccagtttgtataaatatctgt |
33834306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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