View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_56 (Length: 224)
Name: NF11092_low_56
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 35762127 - 35762335
Alignment:
| Q |
1 |
gtttatcagtttaacttggaataaacccacattttgttgtatcatcttcatcaaatccattaatttgggattgaataatatttacatatctcatatattt |
100 |
Q |
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| T |
35762127 |
gtttatcggtttaacttggaataaacccacattttgttgtatcatcttcatcaaatccattaatttgggattgaataatatttacatatctcatatattt |
35762226 |
T |
|
| Q |
101 |
ttctatacgcatcaaccgataacgaatcaaagactacatggttnnnnnnntcaaagcatctatattacttgtttcctacaccaaattggtaatacattgt |
200 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35762227 |
ttctatacgcatcagccaataacgaatcaaagactacatggttaaaaaaatcaaagaatctatattacttgtttcctacaccaaattggtaatacattgt |
35762326 |
T |
|
| Q |
201 |
agtgttttt |
209 |
Q |
| |
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||||||||| |
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| T |
35762327 |
agtgttttt |
35762335 |
T |
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