View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11092_low_6 (Length: 518)
Name: NF11092_low_6
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11092_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 360 - 491
Target Start/End: Original strand, 12819154 - 12819285
Alignment:
| Q |
360 |
tgttaaaaatatataagacacccaataaaatcgagagtgggaaaacattcaaagagagattttcttttagtatatagatatagaccatattttctgcact |
459 |
Q |
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| T |
12819154 |
tgttaaaaatatataagacacccaatgaaatcgagagtgggaaaacattcaaagagagattttcttatagtatatagatatagaccatattttctgcact |
12819253 |
T |
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| Q |
460 |
attttcttgaaaacaaaagttggtgaaagcaa |
491 |
Q |
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| T |
12819254 |
attttcttgaaaacaaaagttggtgaaagcaa |
12819285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 218 - 327
Target Start/End: Original strand, 12819029 - 12819138
Alignment:
| Q |
218 |
gtagttgaagaagcacgaaaatgactgagtcaagtgattacacacaacagaagctatgtatatataataattaagtaattatggtaaagaagtccctaga |
317 |
Q |
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| T |
12819029 |
gtagttgaagaagcacgaaaatgactgagtcaagtgattacacacaactgaagctatgtatatataataattaagtaattatggtaaagaagtccctaga |
12819128 |
T |
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| Q |
318 |
ttcttgcaaa |
327 |
Q |
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| T |
12819129 |
ttcttgcaaa |
12819138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 12818812 - 12818959
Alignment:
| Q |
8 |
agagaagaaatgattttagagaaaaggcagccatatt------atacatataagtttttggtttccattccgaaatttgacgaacgcaaaaagcttcgtg |
101 |
Q |
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| T |
12818812 |
agagaagaaatgattttagagaaaaggcagccatatgtatatcatacatataagtttatggttttcattgcgaaatttgacaaacgaaaaaagcttcgtg |
12818911 |
T |
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| Q |
102 |
acaatatgtaggcagctgagttcaaggcaaccatagaagaagtgattt |
149 |
Q |
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| T |
12818912 |
acaatatataggcagctgagttcaaggcaaccatagaagaagtgattt |
12818959 |
T |
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