View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11092_low_9 (Length: 445)

Name: NF11092_low_9
Description: NF11092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11092_low_9
NF11092_low_9
[»] chr5 (1 HSPs)
chr5 (10-445)||(5461551-5461993)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 445
Target Start/End: Original strand, 5461551 - 5461993
Alignment:
Q  10 agagatgaacaaacctaacattcctcccatcatatgtcttagacaagattaaggacataacctacatccgaaggtaacacaaactcacaacctaaccacc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5461551 agagatgaacaaacctaacattcctcccatcatatgtcttagacaagactaaggacataacctacatccgaaggtaacacaaactcacaacctaaccacc 5461650  T
Q  110 tggatataacacacaaactactgaacaaataca---caaacaaatgactaatagactcaacataatcattgcaaaaataagagatctctccgtttaataa 206  Q
    |||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5461651 tggatataacacacgaactactgaacaaatacataacaaacaaatgactaatagactcaacataatcactgcaaaaataagagatctctccgtttaataa 5461750  T
Q  207 agagattcagacgagtcaataccttatcctaaaacaaacatcaacaaaacaccttaaccttaagaagtgtccaaaaa-ttcaaacacgagaaaggagata 305  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||     
T  5461751 agagattcagacgagtcaataccttatcctgaaacaaacatcaacaaaataccttaaccttaagaagtgttcaaaaatttcaaacaccagaaaggagatc 5461850  T
Q  306 gccccctccttgagcgccctaccccactggcagtcctcctagttgatagtaatgagggcaaagcttatatcctttaattaagcttatgtcctttaatct- 404  Q
    ||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  5461851 gccacctcctcgagcaccctaccccactagcagtcctcctagttgatagtaatgagggcaaagcttatatcctttaattaagcttatgtcctttaatata 5461950  T
Q  405 --aacaaattattattattgtaaggagaaaattctgttagatt 445  Q
      |||||||||||||||||||||||||||||||||||||||||    
T  5461951 acaacaaattattattattgtaaggagaaaattctgttagatt 5461993  T

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