View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_high_16 (Length: 406)
Name: NF11093_high_16
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 12683116 - 12682744
Alignment:
| Q |
19 |
cattcatgaaattttacattgattaagggtttgtggtttccgtagtttgaattggaataaatgcagaggttttgctttggggtagtacgtttgtactact |
118 |
Q |
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| T |
12683116 |
cattcatgaaattttacattgattaagggtttgtggtttccgtagtttgaattggaataaatgcagaggttttgctttggggtagtacgtttgtactact |
12683017 |
T |
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| Q |
119 |
tttggggatatacacacacagctatcgtataattaatgtttattttgagtttgttgttatgtttatgcatgcgttattttaaatttggtaagagggggct |
218 |
Q |
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| T |
12683016 |
tttggggatatacacacacagctatcgtataattaatgtttattttgagtttgttgttatgtttatgcatgcgttattttaaatttggtaagagggggct |
12682917 |
T |
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| Q |
219 |
ttgcacgtagccatgtaacgctcatgacaatcctaagaatgagacatgtaacactcatgacaatgctaagaatgaggccactaatatgaggaaaatactt |
318 |
Q |
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| T |
12682916 |
ttgcacgtagccatggaacgctcatgacaatcctaagaatgagacatgtaacactcatgacaatgctaagaatgaggccactaatacgaggaaaatactt |
12682817 |
T |
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| Q |
319 |
cgatgactttgagtttttgtgactagaggtgttaaatggtttcgtccggtcctggcttggaccatgagtcagt |
391 |
Q |
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| T |
12682816 |
cgatgactttgagtttttgtgactagtggtgttaaatggtttcgtctggtcctggcctgagccatgagccagt |
12682744 |
T |
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