View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_high_21 (Length: 371)
Name: NF11093_high_21
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 2786512 - 2786164
Alignment:
| Q |
15 |
caatgcactgtattcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaa |
114 |
Q |
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| T |
2786512 |
caatgcactgtattcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaa |
2786413 |
T |
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| Q |
115 |
ccagttttatgatgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatc |
214 |
Q |
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| T |
2786412 |
ccagttttatgatgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatc |
2786313 |
T |
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| Q |
215 |
tacaatgctggagctgtcaatccacctgttgatgcgaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccg |
314 |
Q |
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| T |
2786312 |
tacaatgctggagctgtcaatccaccggttgatgctaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccg |
2786213 |
T |
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| Q |
315 |
gaacaacaaacttgccttcaaatcaaattcatgttaaagttgatgatgt |
363 |
Q |
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| T |
2786212 |
gaacaacaaacttgccttcaaatcaaattcatgttaaagttgacgatgt |
2786164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 22517201 - 22517262
Alignment:
| Q |
17 |
atgcactgtattcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcc |
78 |
Q |
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| T |
22517201 |
atgcactgtatccttgtggcagccagtaatccttacccattgcagacaccggtatatgttcc |
22517262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 22517462 - 22517521
Alignment:
| Q |
163 |
tatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgc |
222 |
Q |
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| T |
22517462 |
tatttctctatcggtcgtctgcccaaaacaacttcccaaaattaaagccatctacaatgc |
22517521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 22517280 - 22517356
Alignment:
| Q |
81 |
agaagaatgaatccattgactcggaatcaggt-aaccagttttatgatgctgaagatgttgctaaagcatttccgcag |
157 |
Q |
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| T |
22517280 |
agaagactgaatccattgactca-aaccaagtgaaccagttatatgatgctgaagctgttgctaaagcgtttccgcag |
22517356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 22518232 - 22518281
Alignment:
| Q |
259 |
tcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtc |
308 |
Q |
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|||| |||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
22518232 |
tcttattttaatatcagaaggttttagggaagcccgcagtgccttgagtc |
22518281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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