View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_high_31 (Length: 264)
Name: NF11093_high_31
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 2359931 - 2359681
Alignment:
| Q |
8 |
gagagagaagaaggattgacatgttgcctaattctgccatgacccaaattctgaaatatagaaattgattatattattatccatttgtaagtaaaaagga |
107 |
Q |
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| T |
2359931 |
gagaaagaagaaggattgacatgttgcctgattctgccatgacccaaattctgaaatatagaaattgattatattattatccatttctaagtaaaaagga |
2359832 |
T |
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| Q |
108 |
cataaataaagaaacaaaccaagttgtaagagagattgaggtcagcatattccaatgcaacaagttgtgaacttcgtaactgtggcttttgttgttg--- |
204 |
Q |
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| T |
2359831 |
cataaataaagaaacaaaccaagttgtaagagagattgaggtcagcatattccaatgcaacaagttgtgagcttcgtagttgtggtttttgttgttgata |
2359732 |
T |
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| Q |
205 |
gccttgttctgctactgccactactaattgggacaaagaagaagaggaaga |
255 |
Q |
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| T |
2359731 |
gtcttgttctgctgctactactattacttgggaagaagaagaagaagaaga |
2359681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 2351384 - 2351332
Alignment:
| Q |
125 |
accaagttgtaagagagattgaggtcagcatattccaatgcaacaagttgtga |
177 |
Q |
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| T |
2351384 |
accaagttgttagagaggttgagttcagcatattctaatgcaacgagttgtga |
2351332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 2351506 - 2351462
Alignment:
| Q |
20 |
ggattgacatgttgcctaattctgccatgacccaaattctgaaat |
64 |
Q |
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| T |
2351506 |
ggattgacatgttgcctgattctgacatgacccatatcctgaaat |
2351462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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