View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_high_33 (Length: 253)
Name: NF11093_high_33
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 42712482 - 42712708
Alignment:
| Q |
8 |
agagaagaaaatggctggaacaatgaacgagattgattgcttcaacttatttgacaacattgatgacatttaccccgtcgacgacgttgacaccgctgcc |
107 |
Q |
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| T |
42712482 |
agagaagaaaatggctggaacaatgaacgagattgattgcttcaacttatttgacaacattgatgacatttaccccgtcgacgatgttgacaccgctgcc |
42712581 |
T |
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| Q |
108 |
gcctcattgccttcctccgcgggaaactacaactcgttggcgagtatctggccgaatgagtctgactcggttttttccggcaatagtacttcagacctct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42712582 |
gcctcattgccttcctccgcgggaaactacaactcgttggcgagtatctggccgaatgagtctgactcggttttttccggcaatagtacttcagacctct |
42712681 |
T |
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| Q |
208 |
cggcggagctccccgttgatccggtga |
234 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42712682 |
cggcggagctccccgttgatccggtga |
42712708 |
T |
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