View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11093_high_34 (Length: 252)

Name: NF11093_high_34
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11093_high_34
NF11093_high_34
[»] chr1 (11 HSPs)
chr1 (89-231)||(40905872-40906014)
chr1 (1-61)||(40905797-40905857)
chr1 (27-61)||(9922206-9922240)
chr1 (27-58)||(15873802-15873833)
chr1 (25-58)||(38327140-38327173)
chr1 (27-60)||(41081254-41081287)
chr1 (25-57)||(19612231-19612263)
chr1 (25-61)||(24876377-24876413)
chr1 (25-57)||(33090165-33090197)
chr1 (25-61)||(40158573-40158609)
chr1 (25-61)||(52736633-52736669)
[»] chr8 (6 HSPs)
chr8 (28-61)||(26413399-26413432)
chr8 (25-57)||(39162255-39162287)
chr8 (28-61)||(32535494-32535527)
chr8 (25-57)||(5135250-5135282)
chr8 (25-61)||(6568578-6568614)
chr8 (25-57)||(6802061-6802093)
[»] chr6 (2 HSPs)
chr6 (25-61)||(19745337-19745373)
chr6 (21-61)||(23666329-23666369)
[»] chr5 (2 HSPs)
chr5 (27-59)||(37993622-37993654)
chr5 (29-61)||(10293518-10293550)
[»] chr4 (11 HSPs)
chr4 (29-61)||(23149867-23149899)
chr4 (29-61)||(28485799-28485831)
chr4 (25-61)||(56446886-56446922)
chr4 (25-60)||(41136525-41136560)
chr4 (25-56)||(47774069-47774100)
chr4 (27-61)||(29728745-29728779)
chr4 (27-61)||(50744801-50744835)
chr4 (27-56)||(20863764-20863793)
chr4 (25-61)||(24166627-24166663)
chr4 (25-57)||(25209821-25209853)
chr4 (25-57)||(49437750-49437782)
[»] chr3 (9 HSPs)
chr3 (25-56)||(35418065-35418096)
chr3 (27-61)||(20494022-20494056)
chr3 (27-61)||(53506230-53506264)
chr3 (27-57)||(54258452-54258482)
chr3 (25-54)||(26599634-26599663)
chr3 (25-58)||(46612917-46612950)
chr3 (29-61)||(1707277-1707309)
chr3 (25-61)||(23558761-23558797)
chr3 (25-61)||(42139562-42139598)
[»] chr7 (2 HSPs)
chr7 (27-57)||(32002086-32002116)
chr7 (27-61)||(46896129-46896163)
[»] chr2 (2 HSPs)
chr2 (28-61)||(15997486-15997519)
chr2 (28-56)||(33582411-33582439)
[»] scaffold0450 (1 HSPs)
scaffold0450 (21-61)||(11411-11451)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 40905872 - 40906014
Alignment:
Q  89 gccaacatacacacatacaaaatgtcttatttgtgaatacgtttagcaaaaaatgatgtatcagttttgctagtaaaattgtaatgaaaacaatttatca 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40905872 gccaacatacacacatacaaaatgtcttatttgtgaatacgtttagcaaaaaatgatgtatcagttttgctagtaaaattgtaatgtaaacaatttatca 40905971  T
Q  189 acttatcactcctatatcaaacttaggctaaaacatagcacat 231  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40905972 acttatcactcctatatcaaacttaggctaaaacatagcacat 40906014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40905797 - 40905857
Alignment:
Q  1 gagttaaatgtccagggttcaaagatactaacataacaattaacatactaacatttgtcat 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40905797 gagttaaatgtccagggttcaaagatactaacataacaattaacatactaacatttgtcat 40905857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 9922206 - 9922240
Alignment:
Q  27 actaacataacaattaacatactaacatttgtcat 61  Q
    |||||||||||||||||||||||||||||||||||    
T  9922206 actaacataacaattaacatactaacatttgtcat 9922240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 58
Target Start/End: Original strand, 15873802 - 15873833
Alignment:
Q  27 actaacataacaattaacatactaacatttgt 58  Q
    ||||||||||||||||||||||||||||||||    
T  15873802 actaacataacaattaacatactaacatttgt 15873833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 38327140 - 38327173
Alignment:
Q  25 atactaacataacaattaacatactaacatttgt 58  Q
    ||||||||||||||||||||||||||| ||||||    
T  38327140 atactaacataacaattaacatactaatatttgt 38327173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 41081254 - 41081287
Alignment:
Q  27 actaacataacaattaacatactaacatttgtca 60  Q
    ||||||||||||||||| ||||||||||||||||    
T  41081254 actaacataacaattaaaatactaacatttgtca 41081287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 19612231 - 19612263
Alignment:
Q  25 atactaacataacaattaacatactaacatttg 57  Q
    ||||||||||||||||||||||||| |||||||    
T  19612231 atactaacataacaattaacatactgacatttg 19612263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 24876413 - 24876377
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtcat 61  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  24876413 atactaacgtaacaattaacttactaacatttgtcat 24876377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 33090197 - 33090165
Alignment:
Q  25 atactaacataacaattaacatactaacatttg 57  Q
    |||||||||||||| ||||||||||||||||||    
T  33090197 atactaacataacagttaacatactaacatttg 33090165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 40158573 - 40158609
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtcat 61  Q
    |||||||||||||| |||||||| |||||||||||||    
T  40158573 atactaacataacagttaacatattaacatttgtcat 40158609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 52736669 - 52736633
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtcat 61  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  52736669 atactcacataacaattaacatagtaacatttgtcat 52736633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 26413432 - 26413399
Alignment:
Q  28 ctaacataacaattaacatactaacatttgtcat 61  Q
    ||||||||||||||||||||||||||||||||||    
T  26413432 ctaacataacaattaacatactaacatttgtcat 26413399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 39162255 - 39162287
Alignment:
Q  25 atactaacataacaattaacatactaacatttg 57  Q
    |||||||||||||||||||||||||||||||||    
T  39162255 atactaacataacaattaacatactaacatttg 39162287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 32535494 - 32535527
Alignment:
Q  28 ctaacataacaattaacatactaacatttgtcat 61  Q
    |||||||||||||||||||| |||||||||||||    
T  32535494 ctaacataacaattaacatattaacatttgtcat 32535527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 5135250 - 5135282
Alignment:
Q  25 atactaacataacaattaacatactaacatttg 57  Q
    |||||||||| ||||||||||||||||||||||    
T  5135250 atactaacattacaattaacatactaacatttg 5135282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 6568578 - 6568614
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtcat 61  Q
    ||||||||||||||||| | |||||||||||||||||    
T  6568578 atactaacataacaatttaaatactaacatttgtcat 6568614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 6802061 - 6802093
Alignment:
Q  25 atactaacataacaattaacatactaacatttg 57  Q
    |||||||||||||||||||||||||||| ||||    
T  6802061 atactaacataacaattaacatactaacgtttg 6802093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 19745337 - 19745373
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtcat 61  Q
    ||||||||||||||||||||||||||||| |||||||    
T  19745337 atactaacataacaattaacatactaacaattgtcat 19745373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 23666329 - 23666369
Alignment:
Q  21 aaagatactaacataacaattaacatactaacatttgtcat 61  Q
    ||||| |||||||||| |||||||||||||| |||||||||    
T  23666329 aaagaaactaacataataattaacatactaaaatttgtcat 23666369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 37993622 - 37993654
Alignment:
Q  27 actaacataacaattaacatactaacatttgtc 59  Q
    |||||||||||||||||||||||||||||||||    
T  37993622 actaacataacaattaacatactaacatttgtc 37993654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 10293550 - 10293518
Alignment:
Q  29 taacataacaattaacatactaacatttgtcat 61  Q
    |||||||| ||||||||||||||||||||||||    
T  10293550 taacataataattaacatactaacatttgtcat 10293518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 23149899 - 23149867
Alignment:
Q  29 taacataacaattaacatactaacatttgtcat 61  Q
    |||||||||||||||||||||||||||||||||    
T  23149899 taacataacaattaacatactaacatttgtcat 23149867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 28485799 - 28485831
Alignment:
Q  29 taacataacaattaacatactaacatttgtcat 61  Q
    |||||||||||||||||||||||||||||||||    
T  28485799 taacataacaattaacatactaacatttgtcat 28485831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 56446922 - 56446886
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtcat 61  Q
    ||||||||||| |||||||||||||||||||||||||    
T  56446922 atactaacatatcaattaacatactaacatttgtcat 56446886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 41136560 - 41136525
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtca 60  Q
    |||||||||||||||||||||||||||||| |||||    
T  41136560 atactaacataacaattaacatactaacatctgtca 41136525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 47774100 - 47774069
Alignment:
Q  25 atactaacataacaattaacatactaacattt 56  Q
    ||||||||||||||||||||||||||||||||    
T  47774100 atactaacataacaattaacatactaacattt 47774069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 29728779 - 29728745
Alignment:
Q  27 actaacataacaattaacatactaacatttgtcat 61  Q
    ||||||||||||||||||||||||||| |||||||    
T  29728779 actaacataacaattaacatactaacacttgtcat 29728745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 50744801 - 50744835
Alignment:
Q  27 actaacataacaattaacatactaacatttgtcat 61  Q
    |||||||||||||||||||| ||||||||||||||    
T  50744801 actaacataacaattaacatgctaacatttgtcat 50744835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 20863764 - 20863793
Alignment:
Q  27 actaacataacaattaacatactaacattt 56  Q
    ||||||||||||||||||||||||||||||    
T  20863764 actaacataacaattaacatactaacattt 20863793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 24166663 - 24166627
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtcat 61  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  24166663 atactaacataacaatcaacatactatcatttgtcat 24166627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 25209821 - 25209853
Alignment:
Q  25 atactaacataacaattaacatactaacatttg 57  Q
    |||||||||||| ||||||||||||||||||||    
T  25209821 atactaacataataattaacatactaacatttg 25209853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 49437750 - 49437782
Alignment:
Q  25 atactaacataacaattaacatactaacatttg 57  Q
    ||||||||| |||||||||||||||||||||||    
T  49437750 atactaacacaacaattaacatactaacatttg 49437782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 35418096 - 35418065
Alignment:
Q  25 atactaacataacaattaacatactaacattt 56  Q
    ||||||||||||||||||||||||||||||||    
T  35418096 atactaacataacaattaacatactaacattt 35418065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 20494022 - 20494056
Alignment:
Q  27 actaacataacaattaacatactaacatttgtcat 61  Q
    |||||||||| ||||||||||||||||||||||||    
T  20494022 actaacataataattaacatactaacatttgtcat 20494056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 53506230 - 53506264
Alignment:
Q  27 actaacataacaattaacatactaacatttgtcat 61  Q
    |||||||||||||||||||||||||||||| ||||    
T  53506230 actaacataacaattaacatactaacatttatcat 53506264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Original strand, 54258452 - 54258482
Alignment:
Q  27 actaacataacaattaacatactaacatttg 57  Q
    |||||||||||||||||||||||||||||||    
T  54258452 actaacataacaattaacatactaacatttg 54258482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 26599634 - 26599663
Alignment:
Q  25 atactaacataacaattaacatactaacat 54  Q
    ||||||||||||||||||||||||||||||    
T  26599634 atactaacataacaattaacatactaacat 26599663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 46612950 - 46612917
Alignment:
Q  25 atactaacataacaattaacatactaacatttgt 58  Q
    ||||||||||||||||||||||| ||||||||||    
T  46612950 atactaacataacaattaacatattaacatttgt 46612917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 1707309 - 1707277
Alignment:
Q  29 taacataacaattaacatactaacatttgtcat 61  Q
    ||||||||||||||||||| |||||||||||||    
T  1707309 taacataacaattaacataataacatttgtcat 1707277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 23558797 - 23558761
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtcat 61  Q
    |||||||||| |||||||||||| |||||||||||||    
T  23558797 atactaacattacaattaacatattaacatttgtcat 23558761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 42139598 - 42139562
Alignment:
Q  25 atactaacataacaattaacatactaacatttgtcat 61  Q
    ||||||||||||| || ||||||||||||||||||||    
T  42139598 atactaacataactatcaacatactaacatttgtcat 42139562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 32002116 - 32002086
Alignment:
Q  27 actaacataacaattaacatactaacatttg 57  Q
    |||||||||||||||||||||||||||||||    
T  32002116 actaacataacaattaacatactaacatttg 32002086  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 46896163 - 46896129
Alignment:
Q  27 actaacataacaattaacatactaacatttgtcat 61  Q
    ||||| |||||||||||||||||||||||||||||    
T  46896163 actaaaataacaattaacatactaacatttgtcat 46896129  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 15997486 - 15997519
Alignment:
Q  28 ctaacataacaattaacatactaacatttgtcat 61  Q
    ||||||||||||||||||||||||||||| ||||    
T  15997486 ctaacataacaattaacatactaacatttttcat 15997519  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 33582411 - 33582439
Alignment:
Q  28 ctaacataacaattaacatactaacattt 56  Q
    |||||||||||||||||||||||||||||    
T  33582411 ctaacataacaattaacatactaacattt 33582439  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 11451 - 11411
Alignment:
Q  21 aaagatactaacataacaattaacatactaacatttgtcat 61  Q
    ||||| |||||||||| |||||||||||||| |||||||||    
T  11451 aaagaaactaacataataattaacatactaaaatttgtcat 11411  T

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