View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_12 (Length: 477)
Name: NF11093_low_12
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 258 - 467
Target Start/End: Complemental strand, 14597047 - 14596838
Alignment:
| Q |
258 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
357 |
Q |
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| T |
14597047 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaggatgtggttacagggtaccgcatgcacaatcg |
14596948 |
T |
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| Q |
358 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
457 |
Q |
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| T |
14596947 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatctgcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
14596848 |
T |
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| Q |
458 |
acaggttctg |
467 |
Q |
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|||||||||| |
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| T |
14596847 |
acaggttctg |
14596838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 14597285 - 14597098
Alignment:
| Q |
20 |
atcctaacgtcaggtatggacgtccaggaggtgttcttaggaaacctcgtgaaccactcgatgctcctacagtagcagaatctgtgtctgtcatttcttg |
119 |
Q |
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| T |
14597285 |
atcctaacgtcaggtatggacgtccaggaggtgttcttaggaaacctcgtgaaccactcgatgctcctacagtagcagaatctgtgtctgtcatttcttg |
14597186 |
T |
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| Q |
120 |
ttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgtacttatatacaatattatatatgaaaagacaac |
207 |
Q |
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| T |
14597185 |
ttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgtacttatatacaatattatatatgaaaagacaac |
14597098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 258 - 467
Target Start/End: Original strand, 14611523 - 14611732
Alignment:
| Q |
258 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
357 |
Q |
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|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || |
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| T |
14611523 |
catgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcacaaccg |
14611622 |
T |
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| Q |
358 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
457 |
Q |
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| T |
14611623 |
tggatggcgttctgtatattgcgtgaccaagcgagatgcatttcgcggatcagcaccaattaaccttactgatcgactacaccaggtgctaagatgggcc |
14611722 |
T |
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| Q |
458 |
acaggttctg |
467 |
Q |
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| T |
14611723 |
acaggttctg |
14611732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 465
Target Start/End: Complemental strand, 15417259 - 15417057
Alignment:
| Q |
263 |
aggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggat |
362 |
Q |
| |
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|||||||| || || |||||||||||||| ||| | || ||||||||||| |||||||||||||| || || || || ||| | |||||||| ||||||| |
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| T |
15417259 |
aggtatgaggataaaacagaatggggagatagaataggttggatttatggatcagtgacagaagatgttgtaactggttacagaatgcacaaccgtggat |
15417160 |
T |
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| Q |
363 |
ggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggccacagg |
462 |
Q |
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|| | || ||||||| | || || |||| || || |||||| ||||||| || ||||| || ||||| ||||||| || ||||||||||| ||||| |
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| T |
15417159 |
ggagatcgatatattgcatcacaaaaagagacgctttccgtggaacagcacctataaatctcaccgatcgtttacaccaagttctaagatgggcaacagg |
15417060 |
T |
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| Q |
463 |
ttc |
465 |
Q |
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||| |
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| T |
15417059 |
ttc |
15417057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 405
Target Start/End: Complemental strand, 12192859 - 12192718
Alignment:
| Q |
264 |
ggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggatg |
363 |
Q |
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|||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || || || || || || ||||| || | ||||||||| | ||||| |
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| T |
12192859 |
ggtatgaagataagaccgaatggggagatagagttggatggatttacgggtcggtaaccgaggatgttgtgacaggttatagaatgcacaatagaggatg |
12192760 |
T |
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| Q |
364 |
gcgttctgtatattgtgtaaccaagcgagatgcatttcgtgg |
405 |
Q |
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| T |
12192759 |
gaggtctgtgtattgtgtgaccaagagggatgccttccgtgg |
12192718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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