View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11093_low_13 (Length: 474)

Name: NF11093_low_13
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11093_low_13
NF11093_low_13
[»] chr3 (3 HSPs)
chr3 (18-467)||(5292107-5292552)
chr3 (18-108)||(43115094-43115184)
chr3 (22-114)||(24281089-24281181)
[»] chr6 (1 HSPs)
chr6 (18-114)||(281784-281880)
[»] chr5 (1 HSPs)
chr5 (18-114)||(6109521-6109617)
[»] chr1 (3 HSPs)
chr1 (17-108)||(15581291-15581382)
chr1 (48-105)||(23373258-23373315)
chr1 (18-114)||(12564435-12564531)
[»] scaffold0024 (1 HSPs)
scaffold0024 (18-75)||(27614-27671)
[»] chr8 (2 HSPs)
chr8 (48-96)||(4181451-4181499)
chr8 (18-114)||(6950360-6950456)
[»] chr7 (1 HSPs)
chr7 (18-114)||(34754746-34754842)
[»] chr4 (1 HSPs)
chr4 (18-114)||(19304964-19305060)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 5292552 - 5292107
Alignment:
Q  18 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataaactcaattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5292552 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataaactcaattg 5292453  T
Q  118 taaggctggaaattgaagatcatgcaaactgacgcaatttgtttcttgtttttcaatagccattgataccttctgcgggaagctacaagtggttatccat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  5292452 taaggctggaaattgaagatcatgcaaactgacgcaatttgtttcttgttttccaatagccattgataccttctgccggaagctacaagtggttatccat 5292353  T
Q  218 ttcatcctcaacaatgaagcttgtgagtacctatatcnnnnnnnnnnnnaactgtagtggcatatgaaagaatcttctgtttatgnnnnnnnacacaaaa 317  Q
    |||||||||||||||||||||||||||||||||||||            | ||||||||||||||||| ||||||||||||||||       ||||||||    
T  5292352 ttcatcctcaacaatgaagcttgtgagtacctatatc-----tttttttacctgtagtggcatatgaaggaatcttctgtttatgtttttttacacaaaa 5292258  T
Q  318 ttatcttcat-atttaaatttttgttatcttccttgccattttgcagacatgtttgagcaaaggaagaggctttcacttcccaccatgtcacatgttgaa 416  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5292257 ttatcttcatgatttaaatttttgttatcttccttgccattttgcagacatgtttgagcaaaggaagaggctttcacttcccaccatgtcacatgttgaa 5292158  T
Q  417 tttttgtgggtttaggatcttattcgattgccctcttgatctttcttctct 467  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5292157 tttttgtggggttaggatcttattcgattgccctcttgatctttcttctct 5292107  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 43115094 - 43115184
Alignment:
Q  18 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataa 108  Q
    |||||||||||||||||| |||| |   | ||||||||| ||||| |||||||| ||| | ||||||||||||| |||| ||| |||||||    
T  43115094 gaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagataa 43115184  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 24281089 - 24281181
Alignment:
Q  22 taagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataaactcaa 114  Q
    |||| |||||||||||||| | | | ||||||||| ||| | ||| ||||| || | |||| |||||||||||||| || |||||| ||||||    
T  24281089 taagttgaaaacaacttatggagatatcataagttgttttcataagctctctcaaacaatcacacaagtgcttataccagtagatagactcaa 24281181  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 281880 - 281784
Alignment:
Q  18 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataaactcaa 114  Q
    |||||||||||||||||||||||||   | |||||||||  |||| | | |||||||| | | |||||||||| ||||| |||||| |||| |||||    
T  281880 gaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctctcccaaacagtctcacaagtacttatgtcactacataatctcaa 281784  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 6109521 - 6109617
Alignment:
Q  18 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataaactcaa 114  Q
    ||||||||||||||||||||||| |   | |||||| |||||||| ||| |||||| | ||| ||||||||||| ||||  || |||| ||||||||    
T  6109521 gaaataagctgaaaacaacttatggacatatcataatttttttccataagctctccaaaatattctcacaagtgtttatgccaatagacaaactcaa 6109617  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 15581291 - 15581382
Alignment:
Q  17 agaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataa 108  Q
    ||||||| |||||||||| |||||||   | ||||||||| ||||| | | |||| ||| | |||||||||||||||||| ||| |||||||    
T  15581291 agaaataggctgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataa 15581382  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 23373315 - 23373258
Alignment:
Q  48 tcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactaga 105  Q
    ||||||||| ||||  ||| |||||||| | |||||||||||||||||||||| ||||    
T  23373315 tcataagttgtttctataagctctcccaaacaatctcacaagtgcttatatcagtaga 23373258  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 12564531 - 12564435
Alignment:
Q  18 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataaactcaa 114  Q
    ||||||||||||||||||||||| |  || ||||||| | | | | ||| |||||||| | | || ||||||||||||||||| || |||| |||||    
T  12564531 gaaataagctgaaaacaacttattgacttgtcataagctatatacgtaagctctcccaaacagtcacacaagtgcttatatcagtatataagctcaa 12564435  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 27614 - 27671
Alignment:
Q  18 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctccca 75  Q
    ||||||||||||||||||||||||||  | ||||||| | ||||| ||| ||||||||    
T  27614 gaaataagctgaaaacaacttatagccatgtcataagctatttccataagctctccca 27671  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 4181499 - 4181451
Alignment:
Q  48 tcataagttttttccttaaactctcccatataatctcacaagtgcttat 96  Q
    ||||||||||||||| |||||||||||| ||| ||||| ||||| ||||    
T  4181499 tcataagttttttccataaactctcccaaatagtctcaaaagtgtttat 4181451  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 6950360 - 6950456
Alignment:
Q  18 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataaactcaa 114  Q
    ||||||||||||||||||||||| |   | ||||| ||| ||| | ||| |||||||| | |||||||||| || ||||  || |||||||||||||    
T  6950360 gaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaa 6950456  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 34754842 - 34754746
Alignment:
Q  18 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataaactcaa 114  Q
    |||||||||||||||||||||||||  || ||||||| | ||| ||||| ||||| || | | ||||| ||||| || | ||| ||||||| |||||    
T  34754842 gaaataagctgaaaacaacttataggcttgtcataagatgttttcttaagctctctcaaacagtctcataagtgtttgtgtcaatagataagctcaa 34754746  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 19304964 - 19305060
Alignment:
Q  18 gaaataagctgaaaacaacttatagcgttttcataagttttttccttaaactctcccatataatctcacaagtgcttatatcactagataaactcaa 114  Q
    |||| |||||||||||||||||| |   | ||||||| | |||||  ||| ||||||| | |||||||||| ||||||| ||| ||||||| |||||    
T  19304964 gaaacaagctgaaaacaacttatggacatgtcataagctgtttccacaaattctcccacacaatctcacaaatgcttatgtcaatagataatctcaa 19305060  T

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