View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11093_low_18 (Length: 387)
Name: NF11093_low_18
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 36346752 - 36347123
Alignment:
| Q |
1 |
aattaaagaaaacacttatttgtttcattgatttgatcatgatcaaacatttgtcaaattttctcaagaatgccnnnnnnnttggtattattcttctttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
36346752 |
aattaaagaaaacacttatttgtttcattgatttgatcatgatcaaacatatgtcaaattttctcaagaacgccaaaaaaattggttttattcttctttc |
36346851 |
T |
|
| Q |
101 |
atgatattagcctgattactactttagtttctatcataaagataatgaatagttaagcaatcaaaattcattctgtttagtcgaattgacattttttagt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36346852 |
atgatattagcctgattgatactttagtttctatcataaagataatgaatagttaagcaatcaaaattcattctttttagtcgaattgacattttttagt |
36346951 |
T |
|
| Q |
201 |
ttcattcataaagaaaattaatagtcaactttattcttattttttgttaagcagttacatatcgttattggcattttttatttatccnnnnnnnnnntgg |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36346952 |
ttcattcgtaaagaaaattaatagtcaactttattcttattttttgttaagcagttacatatcgttattggcattttttatttatccaaaaaaaaaaagg |
36347051 |
T |
|
| Q |
301 |
atagttgagaaaaaatttagccgatttattttcaacannnnnnngtattttccaaaaggataatgttttatg |
372 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
36347052 |
atagttgagaaaaaaattaaccgatgtattttcaacatttttttgtatttttcaaaaggataatgttttatg |
36347123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University