View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11093_low_2 (Length: 770)

Name: NF11093_low_2
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11093_low_2
NF11093_low_2
[»] chr3 (23 HSPs)
chr3 (13-548)||(9341246-9341776)
chr3 (299-461)||(9344641-9344803)
chr3 (133-395)||(9377742-9378004)
chr3 (337-426)||(9403059-9403148)
chr3 (337-424)||(9433708-9433795)
chr3 (333-410)||(9370491-9370568)
chr3 (337-426)||(9421298-9421387)
chr3 (114-395)||(9353538-9353819)
chr3 (299-464)||(9449097-9449259)
chr3 (333-407)||(9348837-9348911)
chr3 (89-147)||(9407948-9408006)
chr3 (81-160)||(9370251-9370330)
chr3 (626-683)||(9341847-9341905)
chr3 (77-147)||(9426146-9426213)
chr3 (77-147)||(9441257-9441324)
chr3 (81-156)||(9348597-9348672)
chr3 (84-147)||(9398363-9398426)
chr3 (333-415)||(9654628-9654713)
chr3 (299-412)||(9494046-9494162)
chr3 (299-424)||(9625736-9625864)
chr3 (104-147)||(9417167-9417210)
chr3 (13-42)||(9441347-9441376)
chr3 (81-166)||(9494265-9494350)
[»] chr1 (4 HSPs)
chr1 (307-475)||(8813543-8813714)
chr1 (334-414)||(229914-229994)
chr1 (334-463)||(235947-236076)
chr1 (337-426)||(250597-250686)
[»] chr2 (1 HSPs)
chr2 (333-410)||(20693523-20693600)
[»] chr6 (10 HSPs)
chr6 (303-458)||(7042268-7042423)
chr6 (299-458)||(9158651-9158810)
chr6 (331-464)||(28177173-28177306)
chr6 (299-458)||(9171618-9171777)
chr6 (362-464)||(28132933-28133035)
chr6 (331-464)||(28219940-28220073)
chr6 (361-464)||(28219802-28219905)
chr6 (299-395)||(7047601-7047697)
chr6 (361-464)||(28177035-28177138)
chr6 (299-416)||(7030555-7030672)
[»] chr5 (1 HSPs)
chr5 (299-395)||(18571856-18571955)
[»] scaffold0455 (1 HSPs)
scaffold0455 (362-464)||(10839-10941)
[»] scaffold0038 (2 HSPs)
scaffold0038 (331-464)||(20438-20571)
scaffold0038 (361-464)||(20300-20403)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 548
Target Start/End: Original strand, 9341246 - 9341776
Alignment:
Q  13 gagagtttgttgaagtcaagcacacgaggatgagcaagtgtttcttcttgttgtggttggggatatttgatgagtgggtgaaagagtttggttttgccat 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9341246 gagagtttgttgaagtcaaacacacgaggatgagcaagtgtttcttcttgttgtggtcggggatatttgatgagtgggtgaaagagtttggttttgccat 9341345  T
Q  113 gtgagttttgggtaaatctaatcaaccaaggacgacgaggaattagggcttgttcttcttctagttgcgctgg-tggtggtttgacgaggaagatactgc 211  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| | ||| ||||||||||||||||||||||||||    
T  9341346 gtgagttttgagtaaatctaatcaaccaaggacgacgaggaattagggtttgtttttcctctagttgtgatgggtggtggtttgacgaggaagatactgc 9341445  T
Q  212 gtttggaaaggtagcagaatggagagtcggtgttgttaatggaatcaatgatctcgttgtcgttgtatttgatggaattatcttcatatttgaggagtgg 311  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9341446 gtttggaaaggtagcagaatagagagtcggtgttgttgatggaatcaatgatctcgttgtcgttgtatttgatggaattatcttcacatttgaggagtgg 9341545  T
Q  312 gaatttgaagggtagaatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgatt 411  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||    
T  9341546 gaatttgaagggtaagatgttatggtgatttgggatggaggaagaacgccaattggaacaaatggatcgaaatcgaatgagatcgatttcggtgtcaatt 9341645  T
Q  412 cgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtctgcctcctccgccatggaaactgatgctcctaataataataatgataaaacaa 511  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||| |||||||   ||||| ||   ||||||||||||||||||||   ||| |||||    
T  9341646 cgttgcgatatcagagtgagtagatcctttgggagttgagaccagtttgcctcc---gccatagacgatgatgctcctaataataata---atataacaa 9341739  T
Q  512 ggattagcacaaatcaaaaggtgctagttggtttata 548  Q
     ||||||| ||||| |||| |||   |||||||||||    
T  9341740 tgattagctcaaattaaaaagtgtacgttggtttata 9341776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 299 - 461
Target Start/End: Original strand, 9344641 - 9344803
Alignment:
Q  299 atttgaggagtgggaatttgaagggtagaatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctat 398  Q
    |||||||||||||||| || ||||||| ||||||||| ||||| |||||||| |||||  | |||||||||||||  |||||||||||||||||||| |     
T  9344641 atttgaggagtgggaacttaaagggtaaaatgttatgatgattggggatggaagaagagtgccaattggaacaaacagatcgaaagcgaatgagatcaag 9344740  T
Q  399 ttcggtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtctgc 461  Q
    |||  ||||||  |||||||| || ||| |||| | ||||||||| |||| |||||| |||||    
T  9344741 ttcattgtcgaggcgttgcgatataagattgagaagatcctttgggagttcagaccaatctgc 9344803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 133 - 395
Target Start/End: Original strand, 9377742 - 9378004
Alignment:
Q  133 atcaaccaaggacgacgaggaattagggcttgttcttcttctagttgcgctggtggtggtttgacgaggaagatactgcgtttggaaaggtagcagaatg 232  Q
    |||||||||||||||| | ||||||||| || || || || | |||   || |||||||||||||||||||||  ||||||||||| |||||||| ||||    
T  9377742 atcaaccaaggacgacaacgaattagggtttcttgttgttgttgtt---cttgtggtggtttgacgaggaagaagctgcgtttggagaggtagcaaaatg 9377838  T
Q  233 gagagtcggtgttgttaatggaatcaatgatctcgttgtcgttgtatttgatggaat------tatcttcatatttgaggagtgggaatttgaagggtag 326  Q
     || || || |||||| |||  ||||||||||||||||| ||||   ||||||||||       |    |||||||||| |||||||||| ||||||||     
T  9377839 aagtgttggcgttgttgatgttatcaatgatctcgttgttgttg---ttgatggaatctggtgcaggaacatatttgagaagtgggaattggaagggtaa 9377935  T
Q  327 aatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatc 395  Q
    ||||||||||| |||||| ||||  |||||  | ||| | |||||||  |||||||| |||||||||||    
T  9377936 aatgttatggtcatttggaatgggagaagagtgccaagttgaacaaaccgatcgaaaacgaatgagatc 9378004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 337 - 426
Target Start/End: Original strand, 9403059 - 9403148
Alignment:
Q  337 tgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcaga 426  Q
    |||||| ||||||| |||||||| |||||||||||||  |||||||||||||||||||| |||||||||  |||||||||||| ||||||    
T  9403059 tgatttcggatggaagaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcggtggtgattcgttgcgatatcaga 9403148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 424
Target Start/End: Original strand, 9433708 - 9433795
Alignment:
Q  337 tgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatca 424  Q
    |||||| |||| ||||||||||| |||| ||||||||  ||||| |||||||||||||| ||||| ||||||||||||||||||||||    
T  9433708 tgattttggatcgaggaagaacgccaatgggaacaaactgatcggaagcgaatgagatcaatttcagtgtcgattcgttgcgaaatca 9433795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 9370491 - 9370568
Alignment:
Q  333 atggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgat 410  Q
    |||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||||||| |||||| |||||||    
T  9370491 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcgat 9370568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 337 - 426
Target Start/End: Original strand, 9421298 - 9421387
Alignment:
Q  337 tgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcaga 426  Q
    |||||| ||||||| || ||||| |||||||||||||  |||||||||||||||||||| |||||||||  |||||||||||| ||||||    
T  9421298 tgatttcggatggaagatgaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcggtggtgattcgttgcgatatcaga 9421387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 114 - 395
Target Start/End: Original strand, 9353538 - 9353819
Alignment:
Q  114 tgagttttgggtaaatctaatcaaccaaggacgacgaggaattagggcttgttcttcttctagttgcgctggtggtggtttgacgaggaagatactgcgt 213  Q
    |||||||||||||| ||  ||||||||||| |||||| ||||||||| || || || || | |||   || |||||||||||||||||||||  ||||||    
T  9353538 tgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggtttcttgttgttgttgtt---cttgtggtggtttgacgaggaagaagctgcgt 9353634  T
Q  214 ttggaaaggtagcagaatggagagtcggtgttgttaatggaatcaatgatctcgttgtcgttgtatttgatggaatta--tctt----catatttgagga 307  Q
    ||||| |||| ||  |||| || |  |||||| |  |||  ||||||||||||||||| ||||    |||||||||    | ||    |||||||||| |    
T  9353635 ttggagaggtggccaaatgaagtgctggtgttttcgatgttatcaatgatctcgttgttgttgc---tgatggaatctggtgttggaacatatttgagaa 9353731  T
Q  308 gtgggaatttgaagggtagaatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatc 395  Q
    ||||||||| |||||||| ||||||||||| |||||| || | |||||| || ||| | |||||||  |||||||| |||||||||||    
T  9353732 gtgggaattggaagggtaaaatgttatggtcatttggaatcggggaagagcgccaagttgaacaaactgatcgaaaacgaatgagatc 9353819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 299 - 464
Target Start/End: Original strand, 9449097 - 9449259
Alignment:
Q  299 atttgaggagtgggaatttgaagggtagaatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctat 398  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||   |||||  |  ||| |||||||||  |||||||| ||||||||||| |     
T  9449097 atttgaggagtgggaatttgaagggtaaaatgttatgatgatttgggat---ggaagtgcaccaaatggaacaaactgatcgaaaacgaatgagatcgag 9449193  T
Q  399 ttcggtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtctgcctc 464  Q
    |||  ||||||  | ||| || || ||| |||| |  |||||||| ||||||||||| ||||||||    
T  9449194 ttcattgtcgagcctttgtgatatgagattgagaagttcctttgggagttgagaccaatctgcctc 9449259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 9348837 - 9348911
Alignment:
Q  333 atggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtc 407  Q
    |||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  9348837 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 9348911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 9407948 - 9408006
Alignment:
Q  89 ggtgaaagagtttggttttgccatgtgagttttgggtaaatctaatcaaccaaggacga 147  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  9407948 ggtggaagagtctggttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9408006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 9370251 - 9370330
Alignment:
Q  81 gatgagtgggtgaaagagtttggttttgccatgtgagttttgggtaaatctaatcaaccaaggacgacgaggaattaggg 160  Q
    ||||| |||||  |||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  9370251 gatgactgggttgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattaggg 9370330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 626 - 683
Target Start/End: Original strand, 9341847 - 9341905
Alignment:
Q  626 cggaagctaacgatgaggtgcatatatcatcat-ttgatgatgcaattgcaacaaacaa 683  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||    
T  9341847 cggaagctaacgatgaggtgcatacatcatcatcttcatgatgcaattgcaacaaacaa 9341905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 9426146 - 9426213
Alignment:
Q  77 atttgatgagtgggtgaaagagtttggttttgccatgtgagttttgggtaaatctaatcaaccaaggacga 147  Q
    |||||| |||| |||| ||||||||   ||||||||||||||||||||||| |||||||||||||||||||    
T  9426146 atttgaagagtaggtggaagagttt---tttgccatgtgagttttgggtaactctaatcaaccaaggacga 9426213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 9441324 - 9441257
Alignment:
Q  77 atttgatgagtgggtgaaagagtttggttttgccatgtgagttttgggtaaatctaatcaaccaaggacga 147  Q
    |||||| |||| |||| ||||||||   ||||||||||||||||||||||| |||||||||||||||||||    
T  9441324 atttgaagagtaggtggaagagttt---tttgccatgtgagttttgggtaactctaatcaaccaaggacga 9441257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 9348597 - 9348672
Alignment:
Q  81 gatgagtgggtgaaagagtttggttttgccatgtgagttttgggtaaatctaatcaaccaaggacgacgaggaatt 156  Q
    ||||| |||||  |||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||||| |||||    
T  9348597 gatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgatgaatt 9348672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 9398363 - 9398426
Alignment:
Q  84 gagtgggtgaaagagtttggttttgccatgtgagttttgggtaaatctaatcaaccaaggacga 147  Q
    |||| |||| |||||||||||||||| ||||||||||||||||| ||||||||| ||| |||||    
T  9398363 gagtaggtggaagagtttggttttgcaatgtgagttttgggtaactctaatcaaacaatgacga 9398426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 9654713 - 9654628
Alignment:
Q  333 atggtgatttgggatggaggaaga---acggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgtt 415  Q
    |||||||||||||| |||||||||   ||| |||||||||||||  |||||||||||||| | ||| |||||| ||||||||||||    
T  9654713 atggtgatttgggacggaggaagagcgacgccaattggaacaaaccgatcgaaagcgaatcatatcgatttcgatgtcgattcgtt 9654628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 412
Target Start/End: Complemental strand, 9494162 - 9494046
Alignment:
Q  299 atttgaggagtgggaatttgaagggtagaatgtta---tggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatc 395  Q
    |||||| |||||| |||| |||||||| |||||||   ||||| ||| | ||||| ||||| || |||||| |||| |  ||||||||||||||||||||    
T  9494162 atttgaagagtggaaattcgaagggtaaaatgttaagatggtgctttcgaatggaagaagagcgccaattgcaacagactgatcgaaagcgaatgagatc 9494063  T
Q  396 tatttcggtgtcgattc 412  Q
     ||||| ||||||||||    
T  9494062 gatttcagtgtcgattc 9494046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 9625864 - 9625736
Alignment:
Q  299 atttgaggagtgggaatttgaagggtagaatgttatggtgatttgggatggaggaaga---acggcaattggaacaaatggatcgaaagcgaatgagatc 395  Q
    ||||||||||||| || |||| || || | ||  |||||||| || || |||||||||   ||| |||||||||||||  ||||||||||| ||||||||    
T  9625864 atttgaggagtggaaaattgatggttaaactgagatggtgatctgagacggaggaagagcgacgccaattggaacaaacagatcgaaagcgtatgagatc 9625765  T
Q  396 tatttcggtgtcgattcgttgcgaaatca 424  Q
     |||||| |||| |||| |||||||||||    
T  9625764 gatttcgatgtcaattctttgcgaaatca 9625736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 9417167 - 9417210
Alignment:
Q  104 ttttgccatgtgagttttgggtaaatctaatcaaccaaggacga 147  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  9417167 ttttgccatgtgagttttgggtaactctgatcaaccaaggacga 9417210  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 9441376 - 9441347
Alignment:
Q  13 gagagtttgttgaagtcaagcacacgagga 42  Q
    ||||||||||||||||||||||||||||||    
T  9441376 gagagtttgttgaagtcaagcacacgagga 9441347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 9494350 - 9494265
Alignment:
Q  81 gatgagtgggtgaaagagtttggttttgccatgtgagttttgggtaaatctaatcaaccaaggacgacgaggaattagggcttgtt 166  Q
    |||||||||||  |||| || ||||||||||| ||||| ||||  || ||| | ||||||||||||| || ||||||||| |||||    
T  9494350 gatgagtgggtttaagatttgggttttgccatttgagtattggcgaattcttaccaaccaaggacgatgacgaattagggtttgtt 9494265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 307 - 475
Target Start/End: Complemental strand, 8813714 - 8813543
Alignment:
Q  307 agtgggaatttgaagggtagaatgtta---tggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcgg 403  Q
    ||||||||||||| || || |||||||   ||||||||||||||||| |||||| | ||||||| |||||| ||||| |||||||||||||| ||||||     
T  8813714 agtgggaatttgatggttaaaatgttacggtggtgatttgggatggaagaagaatgccaattggtacaaattgatcggaagcgaatgagatcgatttcgt 8813615  T
Q  404 tgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtctgcctcctccgccatgg 475  Q
    |||||| | ||||||| |||||| | || |  |||| ||| |||| ||||||||||||||||||| ||||||    
T  8813614 tgtcgaattgttgcgatatcagattcagaagctcctgtggcagttcagaccagtctgcctcctcctccatgg 8813543  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 229914 - 229994
Alignment:
Q  334 tggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgt 414  Q
    ||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||||| ||| |||||| |||||||||||    
T  229914 tggtgatttgggatggaagaagaacgccaattggaacagattgatcggaagcgaatgatatcgatttcgttgtcgattcgt 229994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 334 - 463
Target Start/End: Original strand, 235947 - 236076
Alignment:
Q  334 tggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcagagtgagta 433  Q
    |||||||| |||||||| |||||||| ||||||| |||||| ||||| |||||||||||||| |||||| |||| ||| |||  || || ||| | || |    
T  235947 tggtgattcgggatggaagaagaacgccaattggtacaaattgatcggaagcgaatgagatcgatttcgttgtcaatttgttttgatataagattcagaa 236046  T
Q  434 tatcctttggaagttgagaccagtctgcct 463  Q
     ||||||||| |||| |||||| |||||||    
T  236047 gatcctttggcagtttagaccaatctgcct 236076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 426
Target Start/End: Complemental strand, 250686 - 250597
Alignment:
Q  337 tgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcaga 426  Q
    |||||||||||||| | |||||| ||||||||||| || ||||| |||| | ||||||| |||| | |||||| | ||||||| ||||||    
T  250686 tgatttgggatggaagcagaacgccaattggaacatattgatcggaagctattgagatcgattttgttgtcgaatagttgcgatatcaga 250597  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 333 - 410
Target Start/End: Complemental strand, 20693600 - 20693523
Alignment:
Q  333 atggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgat 410  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||| | |||| |||||||    
T  20693600 atggtgatttgggatggaggaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgagttcgctgtcgat 20693523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 303 - 458
Target Start/End: Original strand, 7042268 - 7042423
Alignment:
Q  303 gaggagtgggaatttgaagggtagaatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcg 402  Q
    |||||||||||| |||||||||| ||||| ||| |||||||||| ||||||||  || ||  | |||||||| ||| |||| ||||||||||| | |||     
T  7042268 gaggagtgggaacttgaagggtaaaatgtgatgatgatttgggacggaggaagcgcgccatgttgaacaaattgattgaaatcgaatgagatcaacttca 7042367  T
Q  403 gtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtc 458  Q
     | ||||||||||| || |||||| |||| |  ||| ||||||||| |||||||||    
T  7042368 ttatcgattcgttgtgatatcagattgagaagctccgttggaagtttagaccagtc 7042423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 299 - 458
Target Start/End: Complemental strand, 9158810 - 9158651
Alignment:
Q  299 atttgaggagtgggaatttgaagggtagaatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctat 398  Q
    |||||||||||||||| |||||||||  ||||  ||| ||||| |||| ||||||||| || ||  | |||||||  ||| |||||||||||||||| |     
T  9158810 atttgaggagtgggaacttgaagggtgaaatgggatgatgattggggacggaggaagagcgccatgttgaacaaactgattgaaagcgaatgagatcaac 9158711  T
Q  399 ttcggtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtc 458  Q
    ||||   | ||||||||| || |||||| |||| | |||||||||||||| || ||||||    
T  9158710 ttcgtcattgattcgttgtgatatcagattgagaagatcctttggaagtttagtccagtc 9158651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 464
Target Start/End: Original strand, 28177173 - 28177306
Alignment:
Q  331 ttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcagagtga 430  Q
    ||||| |||||||| ||||| |||||  | |||||||||| ||   ||||||| ||||||||||| | |||  |||||| |||||| || |||||| |||    
T  28177173 ttatgatgatttggaatggaagaagagtgtcaattggaacgaacatatcgaaaacgaatgagatcgagttcattgtcgagtcgttgtgatatcagattga 28177272  T
Q  431 gtatatcctttggaagttgagaccagtctgcctc 464  Q
    | | |||||||||||| |||||||| ||||||||    
T  28177273 gaagatcctttggaagctgagaccaatctgcctc 28177306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 458
Target Start/End: Original strand, 9171618 - 9171777
Alignment:
Q  299 atttgaggagtgggaatttgaagggtagaatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctat 398  Q
    |||||||||||||||| |||||||||  ||||  ||| ||||| |||| ||||||||| || ||  | |||||||  ||| |||||||||||||||| |     
T  9171618 atttgaggagtgggaacttgaagggtgaaatgggatgatgattggggacggaggaagagcgccatgttgaacaaactgattgaaagcgaatgagatcgac 9171717  T
Q  399 ttcggtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtc 458  Q
    |||    | ||||||||| || |||||| |||| | |||||||||||||| || ||||||    
T  9171718 ttcatcatagattcgttgtgatatcagattgagaagatcctttggaagtttagtccagtc 9171777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 464
Target Start/End: Complemental strand, 28133035 - 28132933
Alignment:
Q  362 aattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtctgc 461  Q
    ||||||||||||  |||||| | ||||||||||| | |||  || ||| |||||| || |||||| |||| | ||||||||||||||||||||| |||||    
T  28133035 aattggaacaaacagatcgataacgaatgagatcaagttcattgacgagtcgttgagatatcagattgagaagatcctttggaagttgagaccaatctgc 28132936  T
Q  462 ctc 464  Q
    |||    
T  28132935 ctc 28132933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 331 - 464
Target Start/End: Original strand, 28219940 - 28220073
Alignment:
Q  331 ttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcagagtga 430  Q
    ||||| |||||||| || || |||||  | |||||| ||| ||  |||||||| ||||||||||| | |||  |||||| |||||| || |||||| |||    
T  28219940 ttatgatgatttggaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtcgagtcgttgtgatatcagattga 28220039  T
Q  431 gtatatcctttggaagttgagaccagtctgcctc 464  Q
    | | |||||||||||| |||||||| ||||||||    
T  28220040 gaagatcctttggaagctgagaccaatctgcctc 28220073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 361 - 464
Target Start/End: Complemental strand, 28219905 - 28219802
Alignment:
Q  361 caattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtctg 460  Q
    ||||||||| |||  ||||||||  |||||||||| | |||  |||||| | |||| || |||||| |||| | ||||||||||||||||||||| ||||    
T  28219905 caattggaataaacagatcgaaaatgaatgagatcgacttcactgtcgagttgttgtgatatcagattgagaagatcctttggaagttgagaccaatctg 28219806  T
Q  461 cctc 464  Q
    ||||    
T  28219805 cctc 28219802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 395
Target Start/End: Original strand, 7047601 - 7047697
Alignment:
Q  299 atttgaggagtgggaatttgaagggtagaatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatc 395  Q
    |||||| || |||||| ||| |||||| ||||| ||| |||||||||| ||||||||| || ||  | |||||||  ||||| ||||||||||||||    
T  7047601 atttgaagactgggaacttgtagggtaaaatgtaatgatgatttgggacggaggaagagcgccatgttgaacaaactgatcggaagcgaatgagatc 7047697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 464
Target Start/End: Complemental strand, 28177138 - 28177035
Alignment:
Q  361 caattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtctg 460  Q
    |||||||||||||  |||||||| | ||||||||| | |||  |||||| | |||| || |||||| |||| | |||||||||||| ||| |||| ||||    
T  28177138 caattggaacaaacagatcgaaaacaaatgagatcgacttcactgtcgagttgttgtgatatcagattgagaagatcctttggaagctgataccaatctg 28177039  T
Q  461 cctc 464  Q
    ||||    
T  28177038 cctc 28177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 7030555 - 7030672
Alignment:
Q  299 atttgaggagtgggaatttgaagggtagaatgttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctat 398  Q
    |||||||||||| ||| |||||||||| ||| | ||| ||||| ||||| |||||||| || |   | |||||||  |||||||| ||||||||||| |     
T  7030555 atttgaggagtgagaacttgaagggtaaaatttgatgatgattggggattgaggaagagcgccgtgtcgaacaaactgatcgaaatcgaatgagatcgac 7030654  T
Q  399 ttcggtgtcgattcgttg 416  Q
    ||||  || |||||||||    
T  7030655 ttcgtggtagattcgttg 7030672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 299 - 395
Target Start/End: Original strand, 18571856 - 18571955
Alignment:
Q  299 atttgaggagtgggaatttgaagggtagaatgtta---tggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatc 395  Q
    ||||||| ||||||||||||||||||| |||||||   || ||||||||||||||||||||||| || |||| |||||   |||| ||||||||||||||    
T  18571856 atttgagaagtgggaatttgaagggtaaaatgttagaatgatgatttgggatggaggaagaacgccatttgggacaaaccaatcggaagcgaatgagatc 18571955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 464
Target Start/End: Complemental strand, 10941 - 10839
Alignment:
Q  362 aattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtctgc 461  Q
    ||||||||||||  |||||| | ||||||||||| | |||  || ||| |||||| || |||||| |||| | ||||||||||||||||||||| |||||    
T  10941 aattggaacaaacagatcgataacgaatgagatcaagttcattgacgagtcgttgagatatcagattgagaagatcctttggaagttgagaccaatctgc 10842  T
Q  462 ctc 464  Q
    |||    
T  10841 ctc 10839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 331 - 464
Target Start/End: Original strand, 20438 - 20571
Alignment:
Q  331 ttatggtgatttgggatggaggaagaacggcaattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcagagtga 430  Q
    ||||| |||||||| || || |||||  | |||||| ||| ||  |||||||| ||||||||||| | |||  |||||| |||||| || |||||| |||    
T  20438 ttatgatgatttggaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtcgagtcgttgtgatatcagattga 20537  T
Q  431 gtatatcctttggaagttgagaccagtctgcctc 464  Q
    | | |||||||||||| |||||||| ||||||||    
T  20538 gaagatcctttggaagctgagaccaatctgcctc 20571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 361 - 464
Target Start/End: Complemental strand, 20403 - 20300
Alignment:
Q  361 caattggaacaaatggatcgaaagcgaatgagatctatttcggtgtcgattcgttgcgaaatcagagtgagtatatcctttggaagttgagaccagtctg 460  Q
    ||||||||| |||  ||||||||  |||||||||| | |||  |||||| | |||| || |||||| |||| | ||||||||||||||||||||| ||||    
T  20403 caattggaataaacagatcgaaaatgaatgagatcgacttcactgtcgagttgttgtgatatcagattgagaagatcctttggaagttgagaccaatctg 20304  T
Q  461 cctc 464  Q
    ||||    
T  20303 cctc 20300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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