View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11093_low_20 (Length: 375)

Name: NF11093_low_20
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11093_low_20
NF11093_low_20
[»] chr6 (3 HSPs)
chr6 (148-319)||(2364234-2364410)
chr6 (74-143)||(2364098-2364167)
chr6 (20-57)||(2364077-2364114)
[»] chr2 (1 HSPs)
chr2 (147-184)||(45275157-45275194)
[»] scaffold0915 (1 HSPs)
scaffold0915 (305-360)||(389-445)
[»] chr7 (2 HSPs)
chr7 (148-184)||(28510801-28510837)
chr7 (305-360)||(28984883-28984939)
[»] chr1 (1 HSPs)
chr1 (155-187)||(25592613-25592645)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 319
Target Start/End: Original strand, 2364234 - 2364410
Alignment:
Q  148 ttttttaacttcaataacttcttaaaaacacatgaaaatgatannnnnnnccgctaatgatagttaactacacctgattttgtctcgcggtagttaacta 247  Q
    |||||| ||||||||||||||||||||| ||||||||||||||        ||  ||||||||||||||||  |||||||||||| || |||||||||||    
T  2364234 ttttttgacttcaataacttcttaaaaatacatgaaaatgatatttttt--cgtcaatgatagttaactaccgctgattttgtcttgccgtagttaacta 2364331  T
Q  248 ccattctacatttaaaaca-------aaaaattataaatactctagcgatagttaactgtagtagagcattaaaattta 319  Q
    | |||||||||||||||||       |||||||| |||||||||||||||||||||||   ||||||||||||||||||    
T  2364332 ctattctacatttaaaacaaaaaattaaaaattaaaaatactctagcgatagttaactaccgtagagcattaaaattta 2364410  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 2364098 - 2364167
Alignment:
Q  74 gaaaaatgtcacaattgttgaattttgtaacatcttccttcaatataaaatttcttaaaataagtcttaa 143  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  2364098 gaaaaatgtcacaattgttgaattttgtaatatcttccttcgatataaaatttcttaaaataagtcttaa 2364167  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 2364077 - 2364114
Alignment:
Q  20 cgacccactcgaacagtttccgaaaaatgtcacaattg 57  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2364077 cgacccactcaaacagtttccgaaaaatgtcacaattg 2364114  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 45275157 - 45275194
Alignment:
Q  147 attttttaacttcaataacttcttaaaaacacatgaaa 184  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  45275157 attttttaacttcaataacttcctaataacacatgaaa 45275194  T

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Target: scaffold0915 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0915
Description:

Target: scaffold0915; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 389 - 445
Alignment:
Q  305 gagcattaaaatttagttgttttctacgcaatcacgctgaatgc-tgggtgctcact 360  Q
    |||||| |||||||||||||||||||||||| ||| |||| ||| || |||||||||    
T  389 gagcatgaaaatttagttgttttctacgcaaacacactgagtgcatgtgtgctcact 445  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 28510837 - 28510801
Alignment:
Q  148 ttttttaacttcaataacttcttaaaaacacatgaaa 184  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  28510837 ttttttaacttcaataacttcctaataacacatgaaa 28510801  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 28984883 - 28984939
Alignment:
Q  305 gagcattaaaatttagttgttttctacgcaatcacgctgaatgc-tgggtgctcact 360  Q
    |||||| |||||||||||||||||||||||| ||| |||| ||| || |||||||||    
T  28984883 gagcatgaaaatttagttgttttctacgcaaacacactgagtgcatgtgtgctcact 28984939  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 25592613 - 25592645
Alignment:
Q  155 acttcaataacttcttaaaaacacatgaaaatg 187  Q
    |||||||||||||| ||||||||||||||||||    
T  25592613 acttcaataacttcctaaaaacacatgaaaatg 25592645  T

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