View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_22 (Length: 371)
Name: NF11093_low_22
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 49769999 - 49770341
Alignment:
| Q |
18 |
agtccaaaggtccatatatagttcactacctattaagtccaaatggtcacatgcccgaaaacgattatgatccggtctagtagccttcgatatcttccaa |
117 |
Q |
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| T |
49769999 |
agtccaaaggtccatatatagttcactacctattaagtccaaatggtcacatgcccgaacacgattatgatccggtctagtagccttggatatcttccaa |
49770098 |
T |
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| Q |
118 |
tcaaacttcaatggctaccttgggactcgccgctccgcaatgcctcaatgactcgtaacaaatcattggaactgatgaaacgatgcatgtaacgacttcc |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49770099 |
tcaaactttaatggctaccttgggactcgccgctccgcaatgcctcaatgactcgtaacaaatcattggaactgatgaaacgatgcatgtaacgacttct |
49770198 |
T |
|
| Q |
218 |
catcaagtctttaactccatatgacaaccttgttaagagtgtctttcatcacaaatgcaacacactatctatcccttctatacctctctcactttttgct |
317 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49770199 |
catcaagtctttaactccatacgacaaccttgataagagtgtctttcatcacaaatgcaacacactatctatcccttctatacctctctcactttttgct |
49770298 |
T |
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| Q |
318 |
cttatactaacttgaacgtcagagatacttcaagaattttcat |
360 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
49770299 |
ctaatactaacttgaacgtcaaagatacttcaagaattttcat |
49770341 |
T |
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