View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11093_low_23 (Length: 362)
Name: NF11093_low_23
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 45248356 - 45248012
Alignment:
| Q |
1 |
catgcaaacttttaaacagtacactaataaaattaatttctatgtaaggaaacagctgagacaagttagttaatgtaaaccaaaagaaaaaagtgagtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45248356 |
catgcaaacttttaaacagtacactaataaaattaatttctatgtaaggaaacagctgagacaagttagttaatgtaaaccaaaagaaaaaagtgagtaa |
45248257 |
T |
|
| Q |
101 |
ggtaataaaattaatttctatgannnnnnnn-agacaaatgagttaatgtgcaccaatttaaacaagctatagtaaatgtgatgttgaacagaaacatgt |
199 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45248256 |
ggtaataaaattaatttctatgatttttttttagacaaatgagttaatgtgcaccaatttaaacaagctatagtaaatgtgatgttgaacagaaacatgt |
45248157 |
T |
|
| Q |
200 |
gaagtaagtgaactctagagattaattttgtaattcattatatttgatggtgaaagtttctccataggaagatgtgttaatactactaaaactgaaaacc |
299 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45248156 |
gaagtaagtggactctagagattaattttgtaattcattatatttgatggtgaaagtttctccataggaagatgtgttaatactactaaaactgaaaacc |
45248057 |
T |
|
| Q |
300 |
agtagttgtaattaaaaagaataaagagtaataaaatgaagaaca |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45248056 |
agtagttgtaattaaaaagaataaagagtaataaaatgaagaaca |
45248012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University