View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11093_low_24 (Length: 339)

Name: NF11093_low_24
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11093_low_24
NF11093_low_24
[»] chr2 (4 HSPs)
chr2 (165-320)||(4736285-4736440)
chr2 (2-162)||(4732954-4733115)
chr2 (223-302)||(4744854-4744933)
chr2 (62-162)||(26511105-26511205)
[»] chr7 (4 HSPs)
chr7 (18-143)||(9024955-9025081)
chr7 (57-130)||(22581275-22581348)
chr7 (12-73)||(30334968-30335030)
chr7 (101-164)||(5987697-5987760)
[»] chr6 (4 HSPs)
chr6 (2-162)||(16118424-16118585)
chr6 (18-131)||(20995934-20996048)
chr6 (97-153)||(32054981-32055037)
chr6 (52-143)||(20996801-20996892)
[»] chr8 (2 HSPs)
chr8 (5-162)||(33137403-33137561)
chr8 (54-152)||(33136950-33137048)
[»] chr1 (3 HSPs)
chr1 (24-160)||(12658988-12659123)
chr1 (224-313)||(8136271-8136360)
chr1 (117-162)||(6396167-6396212)
[»] chr5 (4 HSPs)
chr5 (13-125)||(8589030-8589144)
chr5 (52-162)||(19828081-19828191)
chr5 (2-50)||(19043767-19043815)
chr5 (18-145)||(19828480-19828608)
[»] chr4 (2 HSPs)
chr4 (2-73)||(41982526-41982598)
chr4 (99-162)||(41982597-41982660)
[»] chr3 (2 HSPs)
chr3 (66-162)||(53114193-53114290)
chr3 (29-125)||(27647352-27647449)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 4736285 - 4736440
Alignment:
Q  165 agttatgattttcatcactacatgggaggggtttatgaaggaagttgtggacccaagttgaaccatgcagttactataattggttatggggtaagtgatg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4736285 agttatgattttcatcactacatgggaggggtttatgaaggaagttgtggacccaagttgaaccatgcagttactataattggttatggggtaagtgaag 4736384  T
Q  265 aagggaagaagtattggttgattaagaattcttggggtgaaacatggggtgagaaa 320  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4736385 cagggaagaagtattggttgattaagaattcttggggtgaaacatggggtgagaaa 4736440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 4732954 - 4733115
Alignment:
Q  2 catatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgcacgaagaccttggagactaagctcaaca 100  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4732954 catatttataataacatatgtttgtggatgtagaaaacaaagagaatttatagtggtttttaacacttttgcacgaagaccttggagactaagctcaaca 4733053  T
Q  101 tggatgtaacttcattttaaacatgcaaaagataataaataacggtt-aaacacgttctttta 162  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  4733054 tggatgtaacttca-tttaaacatgcaaaagataataaataacagttaaaacacattctttta 4733115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 4744854 - 4744933
Alignment:
Q  223 tgaaccatgcagttactataattggttatggggtaagtgatgaagggaagaagtattggttgattaagaattcttggggt 302  Q
    |||||||||||||||||  | ||||||| || |||||||| || || |  ||||||||||||||||||||||||||||||    
T  4744854 tgaaccatgcagttactgcagttggttacggtgtaagtgaagatggaactaagtattggttgattaagaattcttggggt 4744933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 26511205 - 26511105
Alignment:
Q  62 aacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttt 161  Q
    |||||||||||| |||||||||||||||||   ||||||| |||| |  ||||||| ||||||||| ||  ||||||||||  |||||| | ||||||||    
T  26511205 aacacttttgcatgaagaccttggagactacattcaacatagatgaagtttcatttcaaacatgcagaatgtaataaataatagttaaatatgttctttt 26511106  T
Q  162 a 162  Q
    |    
T  26511105 a 26511105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 9024955 - 9025081
Alignment:
Q  18 tatgtttgtggatgtagaaaacaaagaga-attttagtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt 116  Q
    ||||||||||||||||||||||| ||||| |||  ||||||||| |||||||||||| ||| ||||||||||||| | | || ||||||| |||||||||    
T  9024955 tatgtttgtggatgtagaaaacagagagatattgaagtggttttcaacacttttgcatgaacaccttggagactacgttgaagatggatgaaacttcatt 9025054  T
Q  117 ttaaacatgcaaaagataataaataac 143  Q
    | ||||||||||||  |||||||||||    
T  9025055 tcaaacatgcaaaaagtaataaataac 9025081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 22581275 - 22581348
Alignment:
Q  57 tttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaa 130  Q
    ||||||||||||||||| ||||| |||||| |||| | | |||||||||| || ||||||||||||||| ||||    
T  22581275 tttttaacacttttgcatgaagatcttggaaactacggttaacatggatgaaagttcattttaaacatggaaaa 22581348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 30334968 - 30335030
Alignment:
Q  12 ataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgca 73  Q
    ||||| |||| ||||||||||||||||||||||||||||  |||||||||  |||||||||||    
T  30334968 ataacatatgcttgtggatgtagaaaacaaagagaatttcaagtggttttccacacttttgca 30335030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 5987697 - 5987760
Alignment:
Q  101 tggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttcttttaaa 164  Q
    |||||| |||||| ||| ||||||||||||| ||||||||||| || |||||| || |||||||    
T  5987697 tggatgaaacttcgtttcaaacatgcaaaaggtaataaataacagtcaaacacatttttttaaa 5987760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 16118424 - 16118585
Alignment:
Q  2 catatttgtaataacctatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaaca 100  Q
    ||||||||||||| | |||| || || | ||||||| |||||||||||| | ||| |||||||| ||||| ||||||||| || |||| || | ||||||    
T  16118424 catatttgtaatagcatatgcttatgaacgtagaaagcaaagagaatttgaagtgatttttaacccttttacacgaagacttttgagattatgttcaaca 16118523  T
Q  101 tggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta 162  Q
    || ||| |||||||||||||||||| ||||| |||||||||| |||||||||  ||||||||    
T  16118524 tgaatgaaacttcattttaaacatggaaaaggtaataaataatggttaaacatattctttta 16118585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 20996048 - 20995934
Alignment:
Q  18 tatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt 116  Q
    |||| ||||||||||||||||||||  |||||| | ||||||||  | || |||  |  |||||||||||||||| | | ||||| |||| |||||||||    
T  20996048 tatgcttgtggatgtagaaaacaaattgaatttgaagtggttttgcaaacatttaaataaagaccttggagactatgttgaacattgatggaacttcatt 20995949  T
Q  117 ttaaacatgcaaaag 131  Q
    |||||||||||||||    
T  20995948 ttaaacatgcaaaag 20995934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 32055037 - 32054981
Alignment:
Q  97 aacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacac 153  Q
    |||||| ||| |||||||| | ||||||||||| ||||||||||||| |||||||||    
T  32055037 aacatgtatgaaacttcatctcaaacatgcaaatgataataaataacagttaaacac 32054981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 20996801 - 20996892
Alignment:
Q  52 agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataac 143  Q
    |||| |||| |||||||||||||||   | || ||| ||| | |||||||||||| ||||| |||| ||||| ||||||| |||||||||||    
T  20996801 agtgtttttcaacacttttgcacgagatcgttcgaggctacgttcaacatggatgaaactttatttcaaacacgcaaaaggtaataaataac 20996892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 33137403 - 33137561
Alignment:
Q  5 atttgtaataacctatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatgg 103  Q
    |||| ||||| | ||| ||||||||| ||||||||||||||||||| | ||||||||  ||||||||||| ||| |  ||||||  || ||| ||||||     
T  33137403 atttataatagcatatatttgtggatatagaaaacaaagagaatttgaagtggttttccacacttttgcatgaataaattggaggttacgctgaacatga 33137502  T
Q  104 atgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta 162  Q
    ||| |||||||| | |||||| |||||| |||||||||||  ||||||||||| |||||    
T  33137503 atgaaacttcatgtcaaacattcaaaaggtaataaataacaattaaacacgttttttta 33137561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 33137048 - 33136950
Alignment:
Q  54 tggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaaca 152  Q
    ||||||| |||||| ||||  || |||||| ||  ||| | |||||||||||| |||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  33137048 tggttttcaacactgttgcctgacgacctttgatgctacgttcaacatggatgaaacttcatttcaaatatgcaaaaggtaataaataaccgttaaaca 33136950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 12658988 - 12659123
Alignment:
Q  24 tgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaac 122  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||| |||  || | | |||||||||| || ||||||| ||||    
T  12658988 tgtggatgtagaaaacaaagagaatttgaagtggttttcaacacttttgcatgaagaccttcgaggatacgttgaacatggatgaaatttcatttcaaac 12659087  T
Q  123 atgcaaaagataataaataacggttaaacacgttcttt 160  Q
    ||| ||||  ||||||||||  ||||||||| ||||||    
T  12659088 atg-aaaatgtaataaataa-agttaaacacattcttt 12659123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 8136360 - 8136271
Alignment:
Q  224 gaaccatgcagttactataattggttatggggtaagtgatgaagggaagaagtattggttgattaagaattcttggggtgaaacatgggg 313  Q
    ||||||||  ||| ||||| | ||||| |||||||||||||| |||| ||| || ||| | ||||| |||||||||||||||| ||||||    
T  8136360 gaaccatgttgttgctatagtgggttacggggtaagtgatgatgggaggaaataatggataattaaaaattcttggggtgaaagatgggg 8136271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 6396167 - 6396212
Alignment:
Q  117 ttaaacatgcaaaagataataaataacggttaaacacgttctttta 162  Q
    ||||||||| ||||||||||||||||  ||||||||| ||||||||    
T  6396167 ttaaacatgaaaaagataataaataatagttaaacacattctttta 6396212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 8589144 - 8589030
Alignment:
Q  13 taacctatgtttgtggatgtagaaaacaaagagaatttta--gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaac 110  Q
    |||| |||||||||| ||||||| |||||| | || ||||  |||||||| |||||||||||| |||||| |||||| |||   | |||||||||| |||    
T  8589144 taacatatgtttgtgcatgtagacaacaaataaaaatttaaggtggttttcaacacttttgcatgaagactttggaggctacattgaacatggatgaaac 8589045  T
Q  111 ttcattttaaacatg 125  Q
    |||||||||||||||    
T  8589044 ttcattttaaacatg 8589030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 19828191 - 19828081
Alignment:
Q  52 agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaac 151  Q
    |||| |||| ||||||||| || ||| | |||| || ||| | ||||||| |||| | |||||||| ||| ||||||||||||||||||||  |||||||    
T  19828191 agtgattttcaacacttttccatgaaaatcttgaaggctaggttcaacatcgatgaatcttcatttcaaatatgcaaaagataataaataatagttaaac 19828092  T
Q  152 acgttctttta 162  Q
    || ||||||||    
T  19828091 acattctttta 19828081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 19043767 - 19043815
Alignment:
Q  2 catatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt 50  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  19043767 catatttgtaataacatatgcttgtgggtgtagaaaacaaagagaattt 19043815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 19828480 - 19828608
Alignment:
Q  18 tatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt 116  Q
    |||| ||||||| | |||||||||||| ||||| | ||||||||| ||||||||| | ||||||||| ||  ||| | | |||||| ||| || ||| ||    
T  19828480 tatgcttgtggacgaagaaaacaaagacaatttgaagtggtttttcacacttttgaatgaagaccttcgatgctacgttgaacatgcatgaaatttcgtt 19828579  T
Q  117 ttaaacatgcaaaagataataaataacgg 145  Q
    | ||||||||||||| | ||| |||||||    
T  19828580 tcaaacatgcaaaaggttatagataacgg 19828608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 41982526 - 41982598
Alignment:
Q  2 catatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgca 73  Q
    ||||||||||||| | |||| ||| | ||||||||||||||||||||||  ||||||||||||||||||||||    
T  41982526 catatttgtaatagcatatgcttgggaatgtagaaaacaaagagaatttgaagtggtttttaacacttttgca 41982598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 41982597 - 41982660
Alignment:
Q  99 catggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta 162  Q
    |||| ||| ||||| |||| ||||||| ||||| ||||||||||| |||||||| |||||||||    
T  41982597 catgaatgaaacttaatttcaaacatgtaaaaggtaataaataacagttaaacatgttctttta 41982660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 53114193 - 53114290
Alignment:
Q  66 cttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaat-aacggttaaacacgttctttta 162  Q
    ||||| || |||||| || ||||||| | ||||||| |||| || ||||||| ||||||||||| | |||||||| ||| ||||||||||||||||||    
T  53114193 cttttacatgaagacttttgagactacgttcaacatcgatgaaaattcatttcaaacatgcaaatggtaataaataaacagttaaacacgttctttta 53114290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 27647352 - 27647449
Alignment:
Q  29 atgtagaaaacaaagagaatttt-agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatg 125  Q
    |||||||||||||| |||||||| ||| ||||| |||||||||||| || |||||| ||| ||| | | || |  |||| |||||||||| |||||||    
T  27647352 atgtagaaaacaaaaagaattttaagtagttttcaacacttttgcatgacgacctttgaggctacgttgaatacagatgaaacttcatttcaaacatg 27647449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University