View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_28 (Length: 294)
Name: NF11093_low_28
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 50424255 - 50423985
Alignment:
| Q |
16 |
tcaaatacaacaaccaacgcgtgtgtaattctgtccacgaaaaaagcttgcatcgacactgcactgcatacgcataatgtgtctgctactgctaatgtat |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50424255 |
tcaaatacaacaaccaacgcgtgtgtgattctgtccacgaaaaaagcttgcatcgacactgcactgcatacgcataatgtgtctgctactgctaatgtat |
50424156 |
T |
|
| Q |
116 |
gaatttctgttgttgttgctgctaccgttgtttcagcttcagctgatgttgtttctgcttatttcactcctctcaaatcgtgtaatggcgcgagcaccct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50424155 |
gaatttctgttgttgttgctgctaccgttgtttcagcttcagctgatgttgtttctacttatttcactcctctcaaatcgtgtaatggtgcgagcaccct |
50424056 |
T |
|
| Q |
216 |
accatttagattgcggtgaaatgcataatacagataataaagcattaacatatttcattccatttcttctc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50424055 |
accatttagattgcggtgaaatgcataatacagataataaagcattaacatatttcattccatttcttctc |
50423985 |
T |
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