View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_32 (Length: 260)
Name: NF11093_low_32
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 42093397 - 42093238
Alignment:
| Q |
19 |
tttctgctacaaagttggttgggtattaaggaaaaatgatcattatctttggcagaagtagtctttgatgtgctatctatttgttacttcttatgctatc |
118 |
Q |
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| T |
42093397 |
tttctgctaccaagttggttgggtattaaggaaaaattatcattatctttggtagaagtagtctttgatatgctatctatttgttacttcttatgctatc |
42093298 |
T |
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| Q |
119 |
aattttgagttcctgcatctgagttcaattctcataattatgagatttggaatatcattt |
178 |
Q |
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| T |
42093297 |
aattttgagttcctgcatctgagttcatttctcataattatgagatttggaatatcattt |
42093238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 29707293 - 29707150
Alignment:
| Q |
36 |
gttgggtattaaggaaaaatgatcattatctttggcagaagta--gtctttgatgtgctatctatttgttacttcttatgctatcaattttgagttcctg |
133 |
Q |
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| T |
29707293 |
gttgggtattaaggaaaaattatcattatctttggtataagtatagtcttcgatatgttatctatttgttacttcatatgctatcaattttgagttcctg |
29707194 |
T |
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| Q |
134 |
catctgagttcaattctcataattatgagatttggaatatcatt |
177 |
Q |
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| T |
29707193 |
catctgaattcaattctcataattatgagatttgaaatatcatt |
29707150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 42092569 - 42092511
Alignment:
| Q |
197 |
atcagttgcttgaagattaaataatcattagattatgaggtttacttttctgtgctgct |
255 |
Q |
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| T |
42092569 |
atcagttgcttgaagattaaataatcattagattatgaggtttacttttctgtgttgct |
42092511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 27509841 - 27509704
Alignment:
| Q |
36 |
gttgggtattaaggaaaaatgatcattatctttggcagaagtagtctttgatgtgctatctatttgttacttcttatgctatcaattttgagttcctgca |
135 |
Q |
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| T |
27509841 |
gttgggtattaaggaaatactatcattatctttggtatgagtagtctttgatatgctttctatttgttacttcatatgctatcaattttgagttcatgca |
27509742 |
T |
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| Q |
136 |
tctgagttcaattctcataattatgagatttggaatat |
173 |
Q |
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| T |
27509741 |
tatgagttaaattctcataattatgagatttggaatat |
27509704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 27271570 - 27271707
Alignment:
| Q |
43 |
attaaggaaaaatgatcattatctttggcagaagta--gtctttgatgtgctatctattt-gttacttcttatgctatcaattttgagttcctgcatctg |
139 |
Q |
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||||||||||||| |||||||||||||| | ||||| ||||| ||| || |||| |||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
27271570 |
attaaggaaaaattatcattatctttggtataagtatagtcttcgatatgttatccattttgttacttcatatgctatcaattttgagttcctgcatctg |
27271669 |
T |
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| Q |
140 |
agttcaattctcataattatgagatttggaatatcatt |
177 |
Q |
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| T |
27271670 |
aattcaattctcataattatgacatttgaaatatcatt |
27271707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 39211095 - 39211235
Alignment:
| Q |
36 |
gttgggtattaaggaaaaatgatcattatctttggcagaagta--gtctttgatgtgctatctatttgttacttcttatgctatcaatttt-gagttcct |
132 |
Q |
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|||||||||| |||||| || |||||||||||||| | |||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
39211095 |
gttgggtattgaggaaatattatcattatctttggtatgagtatagtctttgatatgctatctatttgttacttcatatgctatcaatttttgagttcct |
39211194 |
T |
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| Q |
133 |
gcatctgagttcaattctcataattatgagatttggaatat |
173 |
Q |
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||||||||| |||||||| |||||||||||||||||||||| |
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| T |
39211195 |
gcatctgagatcaattcttataattatgagatttggaatat |
39211235 |
T |
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