View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_4 (Length: 682)
Name: NF11093_low_4
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 13 - 664
Target Start/End: Complemental strand, 39174509 - 39173862
Alignment:
| Q |
13 |
atgaagagtgtaagatatgtaaaagagggagaagacagagtaatgtaaaatgagagagagtttacagcgattggaaggaaatggtattccttgaaactgt |
112 |
Q |
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| T |
39174509 |
atgaagagtgtaagatatgtaaaagagggagaagacagagtgatgtaaaatgagagagagtttacagcgattggaaggaaatggtattccttgaaactgt |
39174410 |
T |
|
| Q |
113 |
gaccctcggaaagggattgagaatgaggtaaaattgattgacgagaggttacatttgtttattttgttttaacaaacaaatacagtatggtcatggactc |
212 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39174409 |
gacccttggaaagggattgagaatgaggtaaaattgattgacgagaggttacatttgtttattttgttttaacaaacaaatacagtatggtgatggactc |
39174310 |
T |
|
| Q |
213 |
atgggtcctttccaattaaaatcgacaataaagatgattgatgacgcctctcagaggtagaagctcgtgggtttcctcgttcttatagatgagacggtga |
312 |
Q |
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| T |
39174309 |
atgggtcctttccaattaaaatcgacaataaagatgattgatgatgcctctcagaggtagaagctcgtgggtttcctcgttcttatagatgagacggtga |
39174210 |
T |
|
| Q |
313 |
cccaattgtttcttcgacaacaataagcaaaatgaaaatgagttaaattttcagagattgatattcattttctcttgtttttgttaaattggaatcaatc |
412 |
Q |
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| T |
39174209 |
cccaattgtttcttcgacaacaataagcaaaatgaatatgagttaaattttcagagattgatattcattttctcttgtttttgttaaattggaatcaatc |
39174110 |
T |
|
| Q |
413 |
aagttactgtcttggatgaggaagaccattaaattttacttccaaaagaggacgtctgttattgttggagatgtgagcttcttttttctacaccataatg |
512 |
Q |
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| T |
39174109 |
aagttactgtcttggatgaggaagaccattaaattttacttccaaaagaggacgtctgttattgttggagatgtgagcttcttttttctacaccataatg |
39174010 |
T |
|
| Q |
513 |
ttactttgctacgttagttcctgaatcatcttcacaaatatctacattgtacgatgtgactgaaattgaatgcacgtat--aaaacaactttaaactaac |
610 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| || |||| |||||| |
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| T |
39174009 |
ttactttgttacgttagttcctgaatcatcttcacaaatatctacattgtacgatgtgac------taaatgcacgtatacaaagtaattttagactaac |
39173916 |
T |
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| Q |
611 |
tgtgcatacaaactaaattattaacattttgtatcagttgaaataagcctatgc |
664 |
Q |
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| T |
39173915 |
tgtgcatacaaagtaaattgttaacattttgtatcagttgaaataagcctatgc |
39173862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 99 - 658
Target Start/End: Complemental strand, 39170794 - 39170241
Alignment:
| Q |
99 |
ttccttgaaactgtgaccctcggaaagggattgagaatgaggtaaaattgattgacgagaggttacatttgtttattttgttttaacaaacaaatacagt |
198 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39170794 |
ttccttgaaaatgtgaccctcgggaagggattgagaatgaggtagaattgattgacgaggggttacatttgtttattttgttttaacaaacaaatacagt |
39170695 |
T |
|
| Q |
199 |
atggtcatggactcatgggtcctttccaattaaaatcgacaataaagatgattgatgacgcctctcagaggtagaagctcgtgggtttcctcgttcttat |
298 |
Q |
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| T |
39170694 |
atggtaatggactcatgggtcctttccaattaaaatcgacaataaagatgattgatgacacctctcagaggta------cgtgggtttcctcgttcttat |
39170601 |
T |
|
| Q |
299 |
agatgagacggtgacccaattgtttcttcgacaacaataagcaaaatgaaaatgagttaaattttcagagattgatattcattttctcttgtttttgtta |
398 |
Q |
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| T |
39170600 |
agatgagacggagacccaattgtttcttcgacaacaataagaaaaacgaatatgagttaaattttcagagattgatattcattttctcctgtttttgtta |
39170501 |
T |
|
| Q |
399 |
aattggaatcaatcaagttactgtcttggatgaggaagaccattaaattttacttccaaaagaggacgtctgttattgttggagatgtgagcttcttttt |
498 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39170500 |
aactggaatcgatcaagttactgtcttggatgaggaagaccgttaaattttacttccaaaagaggacgtctgttcttgttggagatgtgagcttcttttt |
39170401 |
T |
|
| Q |
499 |
tctacaccataatgttactttgctacgttagttcctgaatcatcttcacaaatatctacattgtacgatgtgactgaaattgaatgcacgtataaaacaa |
598 |
Q |
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| T |
39170400 |
tctacaccataatgttactttgttatgttagttcctgaatcatcttcacaaatatctacattgtacgatgtgactgaaattgaatgcacgtataaaacaa |
39170301 |
T |
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| Q |
599 |
ctttaaactaactgtgcatacaaactaaattattaacattttgtatcagttgaaataagc |
658 |
Q |
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||||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||| |
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| T |
39170300 |
ctttaaactaagtgtgcatacaaagtaaattattaaccttttgtataagttgaaataagc |
39170241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 39172587 - 39172650
Alignment:
| Q |
154 |
cgagaggttacatttgtttattttgttttaacaaacaaatacagtatggtcatggactcatggg |
217 |
Q |
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||||||||||| ||| |||||| ||| ||||||| |||||| ||||||||||||||||||||| |
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| T |
39172587 |
cgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatggg |
39172650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 39176307 - 39176366
Alignment:
| Q |
13 |
atgaagagtgtaagatatgtaaaagagggagaagacagagtaatgtaaaatgagagagag |
72 |
Q |
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|||||||||| |||| |||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
39176307 |
atgaagagtgcaagaaatgtaaaagagggagaagcaagagtaaagtagaatgagagagag |
39176366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 39172441 - 39172530
Alignment:
| Q |
13 |
atgaagagtgtaagatatgtaaaagagggagaagacagagtaatgtaaaatgagagagagtttacagcgattggaaggaaatggtattcc |
102 |
Q |
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|||||||||| |||| ||| |||| || |||||||||| ||| ||| ||||||||||| ||||||| || ||||||||||||| |||| |
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| T |
39172441 |
atgaagagtgcaagaaatggaaaatagaaagaagacagactaaagtagaatgagagagatcttacagcaatgggaaggaaatggtgttcc |
39172530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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