View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_40 (Length: 239)
Name: NF11093_low_40
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 32358548 - 32358327
Alignment:
| Q |
18 |
ctctttcggctccaccgttattgttgaaggctgcgatacctcacgcgctatttcctgggttcacgcgctgactgttgtggatgggatagtcactcaggtt |
117 |
Q |
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| T |
32358548 |
ctctttcggctccaccgttattgttgaaggctgcgatacctcacgcgctatttcctgggttcacgcgctgactgttgtggatgggatagtcactcaggtt |
32358449 |
T |
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| Q |
118 |
agggagtatttcaacacttcccttaccgtcacacacttcgccgggaaagactccggtgagattgtgccggctaatcccggtggttttccttgtgtttggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32358448 |
agggagtatttcaacacttcccttaccgtcacacacttcgccgggaaagactccggtgagattgtgccggctaatcccggtggttttcattgtgtttggg |
32358349 |
T |
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| Q |
218 |
aaagtagcgtttctgatcgggt |
239 |
Q |
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| T |
32358348 |
aaagtagcgtttctgatcgggt |
32358327 |
T |
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