View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_5 (Length: 607)
Name: NF11093_low_5
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 22 - 394
Target Start/End: Original strand, 48984884 - 48985251
Alignment:
| Q |
22 |
ccctttacagtagctaatttcaaatggaaacagaacactgctcttttcatttctaaaataggcattgccattcaaattccatggattcattcagcaacgc |
121 |
Q |
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| T |
48984884 |
ccctttacagtagctaatttcaaatggaaacagaacactgctcttttcatttctaaaataggcattgccattcaaattccattgattcattcagcaacgc |
48984983 |
T |
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| Q |
122 |
ctattttagaatgaaaacaacatttccctgtttccatttcaaactattgttaaggaagttaatgctgacgaattctttattttcattttagctgatcagg |
221 |
Q |
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| T |
48984984 |
ctattttagaatgaaaacaacatttcactgtttccatttcaaactattgttaaggaagttaatgctgacgaattctttattttcattttagctgatgagg |
48985083 |
T |
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| Q |
222 |
atctttttctaaccatcaattcattctggtctccgtatgtaatcagcaatttttctttcaatttcatatgctacttttcacaaccctctacannnnnnnn |
321 |
Q |
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| T |
48985084 |
atctttttctaaccattaattcattctggtctccgtatgtaatcagcaatttttctttcaatttcatatgttacttttcacaaccctctaca-------- |
48985175 |
T |
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| Q |
322 |
nnnnnnggatataaactgtgcactagcattattatagactaatgttca---tactcattttacaagttgtaaatta |
394 |
Q |
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| T |
48985176 |
ttttttggatataaactgtgcactagcattattatagactaatgttcatactactcattttacaagttttaaatta |
48985251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 48985265 - 48985361
Alignment:
| Q |
438 |
acttctgtcctactctgttcttggcacttttgttttaatttgtttgctatggtgagttgcgtgttttatatgatgtgactcatgacccatgaatagt |
534 |
Q |
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| T |
48985265 |
acttctgtcctactctattcttggcacttttgttttaatttgtttgctatggtgagttgcgtgttttatatgatgtgactcatgacccatgaatagt |
48985361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 533 - 597
Target Start/End: Original strand, 48985410 - 48985474
Alignment:
| Q |
533 |
gtaaatctagcatttatttttatggtttgttatttcttttttggtgttaaccctccggttctctg |
597 |
Q |
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| T |
48985410 |
gtaaatctagcatttatttttacggtttgttatttcttttttggtgttaaccctccggttctctg |
48985474 |
T |
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