View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_6 (Length: 560)
Name: NF11093_low_6
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Complemental strand, 13750100 - 13749573
Alignment:
| Q |
18 |
aaaggaagcacttgaagaggttagcaagctacagaaacagattttatctctacaaacggtgaaggagttcgtgaaaagctcgtatgataattccattgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13750100 |
aaaggaagcacttgaagaggttagcaagctacagaaacagattttatctctacaaacggtgaaggagttcgtgaaaagctcgtatgataattccattgct |
13750001 |
T |
|
| Q |
118 |
aggtactgggaaactgaagataagatcaaggaattacaagagagagtttctgttctgcaagatgaactcggagaaggtatcgttatcgaagacgatgaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13750000 |
aggtactgggaaactgaagataagatcaaggaattacaagagaaagtttctgttctgcaagatgaactcggagaaggtatcgttatcgaagacgatgaag |
13749901 |
T |
|
| Q |
218 |
cgcgccgtttgatggcagaagctgctcttaaatcatgccaagagacattagaacaattgcaagagaaacaggaaaggtcagttcatgaaaccaaaattga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13749900 |
cgcgccgtttgatggcagaagctgctcttaaatcatgccaagaggcaatagaacaattgcaagagaaacaggaaaggtcagttgatgaaaccaaaattga |
13749801 |
T |
|
| Q |
318 |
atccaaaaggataaaagatgctaaggccaaattaggctctctcatgaatgagttcgaatatgatcagagcaaatccaaagagccaagggtgaaaagagat |
417 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13749800 |
atccaaaaggataaaagatgccaaggccaaattaggctctctcatgaatgagttcgaatatgatcagagcaaatccaaagagccaagggtcaaaagagat |
13749701 |
T |
|
| Q |
418 |
gtaaaaagtgtagaagagagaaaggacctggaagaagatgagggtcgattgactcaacagatacaggacttgcagttgttacaggagactgtaaaagtgc |
517 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13749700 |
gtaaaaagtgtagaggagagaaaggacctggaagaagatgagggtcaattgactcaacagatacaggacttgcagttgttacaggagactgtaaaagtgc |
13749601 |
T |
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| Q |
518 |
gctttgaggctagctccaattcctctct |
545 |
Q |
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| T |
13749600 |
gctttgaggctagctccaattcctctct |
13749573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 28753671 - 28753394
Alignment:
| Q |
18 |
aaaggaagcacttgaagaggttagcaagctacagaaacagattttatctctacaaacggtgaaggagttcgtgaaaagctcgtatgataattccattgct |
117 |
Q |
| |
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|||| ||||| ||||||||||| || || |||||||||||| || | ||||||| ||||| ||||| |||||||||| |||||||||||||||||| |
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| T |
28753671 |
aaagcaagcaattgaagaggttgataaacttcagaaacagattctagcattacaaactgtgaaagagtttctgaaaagctcttatgataattccattgct |
28753572 |
T |
|
| Q |
118 |
aggtactgggaaactgaagataagatcaaggaattacaagagagagtttctgttctgcaagatgaactcggagaagg------tatcgttatcgaagacg |
211 |
Q |
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| || ||||| ||||| | |||| |||||||| |||||||||||||| | ||||||| ||||| || ||||| || ||||| || || | |
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| T |
28753571 |
aaatattgggatactgagggacagattaaggaattgcaagagagagtttccaatttgcaagacgaacttggtgaaggtgttgttaatgttattgatgatg |
28753472 |
T |
|
| Q |
212 |
atgaagcgcgccgtttgatggcagaagctgctcttaaatcatgccaagagacattagaacaattgcaagagaaacagg |
289 |
Q |
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| || || |||||||||||||||||||| ||||||||||| |||||||| ||||| || |||||||||||||||| |
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| T |
28753471 |
aggaggctcgccgtttgatggcagaagcggctcttaaatcgtgccaagaaacattgtcacgtttgcaagagaaacagg |
28753394 |
T |
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