View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_7 (Length: 517)
Name: NF11093_low_7
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 2528530 - 2528838
Alignment:
| Q |
13 |
cagagaacaaatcagacaggaaaatgaaacaaaacaaacatgtcagacaaaaaattcattcaatcaagctggtaaaatatttatgaaattaaaaatcatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2528530 |
cagagaacaaatcagacaggaaaatgaaacaaaacaaacatgtcagacaaaaaattgattcaatcaagctggtaaaatatttatgaaattaaaaatcatc |
2528629 |
T |
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| Q |
113 |
atgtttctcatagagaaattaacaaaattcttccatttctctgcatatacatacaaaagcaaaattcagaaaactgatcccttgcatgcaggctcaaaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2528630 |
atgtttctcatagagaaattaacaaaattcttccatttctctgcatatacatacaaaagcaaaattcagaaaactgatcccttgcatgcaggctcagaga |
2528729 |
T |
|
| Q |
213 |
cactcacaaatctcaactgaattccaattgtgaaatcctaaaccctacattcaaaaaccacaaaagaccctttgaaatttctacaccaaaacccctttga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2528730 |
cactcacaaatctcaactgaattccaattgtgaaatcctaaaccctacattcaaaaaccacaaaagaccctttgaaatttctacaccaaaacccctttga |
2528829 |
T |
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| Q |
313 |
tttgaacaa |
321 |
Q |
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||||||||| |
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| T |
2528830 |
tttgaacaa |
2528838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 409 - 517
Target Start/End: Original strand, 2528920 - 2529028
Alignment:
| Q |
409 |
cccatttgaaatattcatgcaaccaattttgtgacattgttgaaacacaagaaaacatcatcataacaaaagggtgagtgagatcaaacataccaaccca |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2528920 |
cccatttgaaatattcatgcaaccaattttgtgacattgttgaaacacaagaaaacatcatcataacaaaagggtgagtgagatcaaacataccaaccca |
2529019 |
T |
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| Q |
509 |
acacaaaac |
517 |
Q |
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||||||||| |
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| T |
2529020 |
acacaaaac |
2529028 |
T |
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