View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_8 (Length: 513)
Name: NF11093_low_8
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 31348058 - 31348552
Alignment:
| Q |
17 |
accaatcatgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaattctttgaaatcagaaccaagaaatgt |
116 |
Q |
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| T |
31348058 |
accaataatgtatttataacacatgatacaccacttcacatatgagaaagcaacctttcacccagagttgcaattctttgaaatcagaaccaagaaatgt |
31348157 |
T |
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| Q |
117 |
atttgctcacttacatttatgtagtagcaatgaaacaatacatttcaatcaaatttatgaacagttacaaccattggaacccaaaatacaagaaaaattg |
216 |
Q |
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| T |
31348158 |
attagctcacttacatttatgtaatagcaatgaaacaatacatttcaatcaaatttatgaacagttacaaccattggaacccaaaatacaagaaaaatcg |
31348257 |
T |
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| Q |
217 |
cacaaaacacatgttttcagattgcacagaaacacacctggcactttcatcgtcgacactcagctctgcctagcgcttgtatgagagcttagctccagtc |
316 |
Q |
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| T |
31348258 |
cagaaaacacatgttttcagattgcacagaaacacacctggcgctttcatcgtcgacgctcagctctgcctagcgcttgtatgagagcttagctccagtc |
31348357 |
T |
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| Q |
317 |
cttagcgtccataaacaaagaatcatcgtccgaacttaattctctaacgtgcaacactgtgttttgatcatttcattgtgtttttacatcatgtaattgg |
416 |
Q |
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| T |
31348358 |
cttagcgtccataaacagagaatcatcgtccgaacttaattctctaacgtgcaacactgtgttttgatcatttcattgtgtttttacatcatgtaattgg |
31348457 |
T |
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| Q |
417 |
tcttgggttttttcaataaatctaaaatgattccattattttgaaaatgactcacagtttctcattggacatcctccattttctctgcttctcca |
511 |
Q |
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| T |
31348458 |
tcttgggttttttcaataaatctaaaatgattccattattttgaaaatgactcacagtttctcatttgacatcctccattttctttgtttctcca |
31348552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 3368518 - 3368703
Alignment:
| Q |
25 |
tgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaattctttgaaatcagaac--------caagaaatgt |
116 |
Q |
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|||||||||||||||||||| || ||||| || |||||||| | ||||||||| ||||||||| | |||||| ||| ||| |||||||||| |
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| T |
3368518 |
tgtatttataacacatgatatactacttcgaatgtgagaaagaactctttcaccaagagttgcattcttttgaattcataacttttgattcaagaaatgt |
3368617 |
T |
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| Q |
117 |
atttgctcacttacatttatgtagtagcaatgaaacaatacatttcaatcaaatttatgaacagttacaaccattggaacccaaaa |
202 |
Q |
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| T |
3368618 |
attggttcacttacagttttgtaataacaatgaaacaatacatttcaatcaagtttatgaagagttacaaccattggaatccaaaa |
3368703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 31892973 - 31893042
Alignment:
| Q |
21 |
atcatgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaat |
90 |
Q |
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| T |
31892973 |
atcatatatttataacatatgatacaccacttcaaatatgagaaagcaacctttcaccaagagttacaat |
31893042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 1986492 - 1986397
Alignment:
| Q |
107 |
caagaaatgtatttgctcacttacatttatgtagtagcaatgaaacaatacatttcaatcaaatttatgaacagttacaaccattggaacccaaaa |
202 |
Q |
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| T |
1986492 |
caagaaatgtactcgttcacttatagttatgtaataacaatgaaacaatacattacaatcaaatttacgaagaattactactattggaacccaaaa |
1986397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 44680763 - 44680551
Alignment:
| Q |
23 |
catgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaattctttgaaatcagaac--------caagaaat |
114 |
Q |
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||||||||||||||| |||||||| |||| ||||||||| || |||| ||||||| ||||||||||| ||||| || ||||| ||||| || |
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| T |
44680763 |
catgtatttataacatatgatacatcact-cacatatgaaaaggcaacctttcacgaagagttgcaatcatttgagattagaactttttattcaagagat |
44680665 |
T |
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| Q |
115 |
gtatttgctcacttacatttatgtagtagcaatgaaacaatacatttcaa--tcaaatttatgaacagttacaaccattggaacccaaaatacaaga-aa |
211 |
Q |
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| T |
44680664 |
gtattaattcactttcagttatgt-gtaacaatgaaacaatacatttcaatctcaaatctataaagagttacgaccattggaaccctaaa-acatgagaa |
44680567 |
T |
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| Q |
212 |
aattgcacaaaacaca |
227 |
Q |
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| T |
44680566 |
aaatgcacaaaacaca |
44680551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 13311048 - 13311002
Alignment:
| Q |
374 |
tgtgttttgatcatttcattgtgtttttacatcatgtaattggtctt |
420 |
Q |
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| T |
13311048 |
tgtgttttgatcattttcttgtgtttttgaatcatgtaattggtctt |
13311002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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