View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11093_low_9 (Length: 513)
Name: NF11093_low_9
Description: NF11093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11093_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 37572545 - 37572119
Alignment:
| Q |
18 |
aaagcaatttagcaagacaaagaagacaaaaactaagcgagaaaacacgctgtcttcagaaactaatgccatgggacaagagaatggatcaagctactct |
117 |
Q |
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| T |
37572545 |
aaagcaacttagcaagacaaagaagacaaaaactaagcgagaaaacacgctgtcttcagaaactaatgccatgggacaagagaatggatcaagctactct |
37572446 |
T |
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| Q |
118 |
ttatgaagaagcttacaaatatgttaagtttttgcaggcacagttatctgttcttcaatcaatgccttcttacggtgtcggctacggcggtggtggaact |
217 |
Q |
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| T |
37572445 |
ttatgaagaagcttacaaatacgttaagtttttgcaggcacagttatctgttcttcaatcaatgccttcttacggtgtcggctacggcggtggtggaact |
37572346 |
T |
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| Q |
218 |
actgcttctggtggtgtttttgatgacttggagaagctgaaaagaaaccaagctttgcagattctggtgaactcaccggttgcacaaacaaagctttgtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37572345 |
actgcttctggtggtgtttttgatgacttggagaagctgaaaagaaaccaagctttgcagattctggtgaactcaccggttgcacaaacaaagctttgtg |
37572246 |
T |
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| Q |
318 |
aacgaggttactgtgttttctccatggaacaattctctctgctgaagaaattatcagaaaaaagacaacaacaagagaatttttctgaacatggttcttc |
417 |
Q |
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| T |
37572245 |
aacgaggttactgtgttttctccatggaacaattctctctgctgaagaaattatcagaaaaaagacaacaacaagagaatttttctgaacatggttcttc |
37572146 |
T |
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| Q |
418 |
aaaaactttctttcactgattgattac |
444 |
Q |
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| T |
37572145 |
aaaaactttctttcactgattgattac |
37572119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 503
Target Start/End: Complemental strand, 37572093 - 37572060
Alignment:
| Q |
470 |
gacaccgtttctcgtgttcgttcaagtttaaccc |
503 |
Q |
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| T |
37572093 |
gacaccgtttcttgtgttcgttcaagtttaaccc |
37572060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 228 - 391
Target Start/End: Original strand, 37221120 - 37221283
Alignment:
| Q |
228 |
gtggtgtttttgatgacttggagaagctgaaaagaaaccaagctttgcagattctggtgaactcaccggttgcacaaacaaagctttgtgaacgaggtta |
327 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||| |||||| |||||||||||||||||| | |||| |
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| T |
37221120 |
gtggtgtttttgatgacttggagaagctgaacagaaaccaagcattacagattttggtgaactcaccagttgcaaaaacaaagctttgtgaacaatgtta |
37221219 |
T |
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| Q |
328 |
ctgtgttttctccatggaacaattctctctgctgaagaaattatcagaaaaaagacaacaacaa |
391 |
Q |
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||||||||||||||||||||||||||| |||| | ||||||||| | ||||||||||||||| |
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| T |
37221220 |
ttgtgttttctccatggaacaattctctttgctcagaaaattatcatagaaaagacaacaacaa |
37221283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 37221019 - 37221093
Alignment:
| Q |
18 |
aaagcaatttagcaagacaaagaagacaaaaactaagcgagaaaacacgctgtcttcagaaactaatgccatggg |
92 |
Q |
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||||||| |||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
37221019 |
aaagcaacttagaaagacaaagaagacaaaatctaagcgagaaaacatgttgtcttcagaaactaatgccatggg |
37221093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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