View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11094_high_12 (Length: 339)
Name: NF11094_high_12
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11094_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 11753817 - 11754125
Alignment:
| Q |
12 |
agcagaacctgtggacacatatattggacgcagctctttagctaagtgtgcaaaaaagcacacctttcggtcacaactagtaccatctttgcagagaatt |
111 |
Q |
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|||||| || ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11753817 |
agcagatccagtggagacatatattggacgcagctcttcagctaagtgtgcaaaaaagcacacctttcggtcacaactagtaccatctttgcagagaatt |
11753916 |
T |
|
| Q |
112 |
gtgcgataccgatctgggtgtagccatgtctcgaatagtccatgagcaaattcacacatatctgcacgtttgcagtccccttttttaaaatcagggcatg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11753917 |
gtgcgataccgatctgggtgtagccatgtctcgaatagtccatgagcaaattcacacgtatctgcacgtttgcagtccccttttttaaaatcagggcatg |
11754016 |
T |
|
| Q |
212 |
gcacacagctgtaggtgaactttctaaggtctctccttcgagcattctcatgaggatgtttaaaaggacactcgctccaatcatgagagtatgcacgagg |
311 |
Q |
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| T |
11754017 |
gtacacagctgtaggtgaactttctaaggtctctccttcgagcattctcatgaggatgtttaaaaggacactcggtccaatcatgagagtatgcacgagg |
11754116 |
T |
|
| Q |
312 |
acaaagaag |
320 |
Q |
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||||||||| |
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| T |
11754117 |
acaaagaag |
11754125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 36 - 320
Target Start/End: Original strand, 11688182 - 11688466
Alignment:
| Q |
36 |
tggacgcagctctttagctaagtgtgcaaaaaagcacacctttcggtcacaactagtaccatctttgcagagaattgtgcgataccgatctgggtgtagc |
135 |
Q |
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|||||||||||||| ||| | ||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||| ||||||| |||||| |
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| T |
11688182 |
tggacgcagctcttcagcaacatgtgcaaaaaagcacacctttcggttacaattagtaccctctttgcagagccttgtgcgatactgatctggatgtagc |
11688281 |
T |
|
| Q |
136 |
catgtctcgaatagtccatgagcaaattcacacatatctgcacgtttgcagtccccttttttaaaatcagggcatggcacacagctgtaggtgaactttc |
235 |
Q |
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|| |||||||||| |||||||||| ||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11688282 |
caggtctcgaatactccatgagcatattcacacatatcaccacgtttgcaatccctagttttaaaatcagcgcatggcacacagctgtaggtgaactttc |
11688381 |
T |
|
| Q |
236 |
taaggtctctccttcgagcattctcatgaggatgtttaaaaggacactcgctccaatcatgagagtatgcacgaggacaaagaag |
320 |
Q |
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|| ||||||||||||| |||||||||| |||||| | ||||||||||||| |||||| ||||| |||||||||| |||||||||| |
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| T |
11688382 |
tagggtctctccttcgtgcattctcattaggatggtaaaaaggacactcggtccaattatgagtgtatgcacgatgacaaagaag |
11688466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 9314540 - 9314843
Alignment:
| Q |
12 |
agcagaacctgtggacacatatattggacgcagctctttagctaagtgtgcaaaaaagcacacctttcggtcacaactagtaccatctttgcagagaatt |
111 |
Q |
| |
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||||||||| ||||||||||| | ||||||||||||| || | |||| || || ||||||||| |||||| ||||| |||| |||||||| || || |
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| T |
9314540 |
agcagaaccagtggacacatacagcggacgcagctcttcaggtgagtgagcgaagaagcacacccttcggttacaacccataccgtctttgcacagcctt |
9314639 |
T |
|
| Q |
112 |
gtgcgataccgatctgggtgtagccatgtctcgaatagtccatgagcaaattcacacatatctgcacgtttgcagtccccttttttaaaatcagggcatg |
211 |
Q |
| |
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|| |||||| || ||||||||||||| |||||||| |||||||||| ||||||||||||| | |||| ||| ||||||| ||||||||||||||| |
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| T |
9314640 |
gtccgatactgagctgggtgtagccagcactcgaatactccatgagcatattcacacatatccgaacgtcggcaagcccctttcctaaaatcagggcatg |
9314739 |
T |
|
| Q |
212 |
gcacacagctgtaggtgaactttctaaggtctctccttcgagcattctcatgaggatgtttaaaaggacactcgctccaatcatgagagtatgcacgagg |
311 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
9314740 |
gcacacagctgtagtgaaactttctagggtctctccttcgagcattctctccaggatgcacaaaaggacactcagtccaatcatgagagtatgcacgaga |
9314839 |
T |
|
| Q |
312 |
acaa |
315 |
Q |
| |
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|||| |
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| T |
9314840 |
acaa |
9314843 |
T |
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