View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11094_high_13 (Length: 288)

Name: NF11094_high_13
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11094_high_13
NF11094_high_13
[»] chr7 (8 HSPs)
chr7 (1-272)||(45429249-45429520)
chr7 (151-266)||(18358793-18358908)
chr7 (156-262)||(18358801-18358907)
chr7 (142-265)||(30017416-30017539)
chr7 (151-206)||(28243160-28243215)
chr7 (222-265)||(45429322-45429365)
chr7 (151-265)||(21906700-21906814)
chr7 (142-234)||(23540176-23540268)
[»] chr4 (7 HSPs)
chr4 (146-265)||(31052982-31053101)
chr4 (170-263)||(37538094-37538187)
chr4 (187-265)||(30546442-30546520)
chr4 (142-267)||(31727990-31728113)
chr4 (179-251)||(21105944-21106016)
chr4 (151-259)||(29276208-29276316)
chr4 (151-203)||(40012005-40012057)
[»] chr3 (2 HSPs)
chr3 (151-265)||(35970443-35970557)
chr3 (139-266)||(8173120-8173245)
[»] chr2 (1 HSPs)
chr2 (151-265)||(1465743-1465857)
[»] chr1 (8 HSPs)
chr1 (187-265)||(35120134-35120212)
chr1 (138-206)||(51587367-51587435)
chr1 (170-265)||(28016590-28016685)
chr1 (183-248)||(16306518-16306583)
chr1 (183-234)||(52066844-52066895)
chr1 (142-200)||(35120168-35120226)
chr1 (177-251)||(43859072-43859146)
chr1 (224-265)||(1279984-1280025)
[»] chr8 (3 HSPs)
chr8 (151-265)||(10172411-10172525)
chr8 (186-265)||(10172441-10172520)
chr8 (174-206)||(28820049-28820081)
[»] chr6 (2 HSPs)
chr6 (138-232)||(26280920-26281014)
chr6 (187-251)||(24766034-24766098)
[»] chr5 (2 HSPs)
chr5 (146-235)||(14717308-14717397)
chr5 (141-234)||(32892000-32892093)
[»] scaffold0245 (1 HSPs)
scaffold0245 (224-265)||(5662-5703)
[»] scaffold0229 (1 HSPs)
scaffold0229 (224-265)||(5992-6033)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 45429520 - 45429249
Alignment:
Q  1 tttcatacccaaaattactcttttgctttgcagggtatgttttgtagaagtttatctgaaattttctaaatgagaatcaactatttgatgttatgttcaa 100  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45429520 tttcatacccaaaatcactcttttgctttgtagggtatgttttgtagaagtttatctgaaattttctaaatgagaatcaactatttgatgttatgttcaa 45429421  T
Q  101 aatgtaaattgataagaatttaattagcatactctgatgttagtgtatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45429420 aatgtaaattgataagaatttaattagcatactctgatgttagtgtatatttattttacacatgcatcaaatgatttgttgccatgtcaattaatgaata 45429321  T
Q  201 tgaaaataaatgagatgtcacattcattaattgacatagcaacacatcattggatgcatgtgtaataattgt 272  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45429320 tgaaaataaatgagatgtcacattcattaattgacgtagcaacacatcattggatgcatgtgtaataattgt 45429249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 18358793 - 18358908
Alignment:
Q  151 ttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcat 250  Q
    ||||||| |||| |||||||||||| ||||| ||||||||||||||||||||| ||   ||| | | |||  |||||||||| |  | | ||||||||||    
T  18358793 ttattttgcacatgcatcaaatgatgtgttgtcatgtcaattaatgaatatgacaagtcatgtgttttcatgttcattaattaatgtggtaacacatcat 18358892  T
Q  251 tggatgcatgtgtaat 266  Q
    ||||||||||||||||    
T  18358893 tggatgcatgtgtaat 18358908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 18358907 - 18358801
Alignment:
Q  156 ttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcattggat 255  Q
    ||||||| ||||| |||||| |||| |||  | |||||||||| ||||||| | ||||  ||||| ||||||||||||||||  |||||||||||| |||    
T  18358907 ttacacatgcatccaatgatgtgttaccacattaattaatgaacatgaaaacacatgacttgtcatattcattaattgacatgacaacacatcatttgat 18358808  T
Q  256 gcatgtg 262  Q
    |||||||    
T  18358807 gcatgtg 18358801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 30017539 - 30017416
Alignment:
Q  142 agtgtatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagca 241  Q
    |||||| | |||||||||||| ||||| || |||  |||| || |||||||||||||||| |||||| ||||| || || |||||||| ||||| | |||    
T  30017539 agtgtacaattattttacacatgcatccaacgatgcgttgtcacgtcaattaatgaatatcaaaatacatgagctgacatattcattagttgacgtggca 30017440  T
Q  242 acacatcattggatgcatgtgtaa 265  Q
    |||   |||||||| ||| |||||    
T  30017439 acattgcattggatacatatgtaa 30017416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 28243160 - 28243215
Alignment:
Q  151 ttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaa 206  Q
    |||||||| ||| ||||| |||||| ||||| ||| ||||||||||||||||||||    
T  28243160 ttattttaaacacgcatccaatgatgtgttgtcatatcaattaatgaatatgaaaa 28243215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 45429322 - 45429365
Alignment:
Q  222 attcattaattgacatagcaacacatcattggatgcatgtgtaa 265  Q
    |||||||||||||||| |||||| |||||| |||||||||||||    
T  45429322 attcattaattgacatggcaacaaatcatttgatgcatgtgtaa 45429365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 265
Target Start/End: Complemental strand, 21906814 - 21906700
Alignment:
Q  151 ttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcat 250  Q
    |||| ||||||| ||||| ||||||   || | ||||||||||||||||||||||| | || || ||||| ||| |||||||||  || || ||||||||    
T  21906814 ttatcttacacatgcatctaatgatactttactatgtcaattaatgaatatgaaaacacataagttgtcatattaattaattgatgtatcatcacatcat 21906715  T
Q  251 tggatgcatgtgtaa 265  Q
     | ||| ||||||||    
T  21906714 agaatgtatgtgtaa 21906700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 23540176 - 23540268
Alignment:
Q  142 agtgtatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattga 234  Q
    |||||||| ||||||| |||| | ||| |||||| ||||  || ||| ||||||||||||||||||| ||||  ||||  ||| |||||||||    
T  23540176 agtgtataattattttgcacatgtatctaatgatgtgttatcacgtctattaatgaatatgaaaatatatgaattgtcttatttattaattga 23540268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 31053101 - 31052982
Alignment:
Q  146 tatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacac 245  Q
    |||| |||||||||||| ||||| |||||| ||||| |  ||||||||||||||||||||| | | ||| ||||| |||||||||| ||  |||||||||    
T  31053101 tataattattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatgaaaacacacgagttgtcatattcattaatcgatgtagcaacac 31053002  T
Q  246 atcattggatgcatgtgtaa 265  Q
    | ||||||||||||||||||    
T  31053001 aacattggatgcatgtgtaa 31052982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 37538094 - 37538187
Alignment:
Q  170 aatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcattggatgcatgtgt 263  Q
    |||||| ||||||||  |||||||||||||||||||| | ||||| |||| ||||||||||||||  | |||||||||| ||| ||||||||||    
T  37538094 aatgatgtgttgccacatcaattaatgaatatgaaaacatatgagttgtcgcattcattaattgatgtcgcaacacatcgttgaatgcatgtgt 37538187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 30546442 - 30546520
Alignment:
Q  187 tcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcattggatgcatgtgtaa 265  Q
    |||||||||||||||||||||| ||||| ||||  ||||| ||||| || |  ||||| ||| ||||||||||||||||    
T  30546442 tcaattaatgaatatgaaaatacatgagttgtcttattcactaattaacgtgacaacatatcgttggatgcatgtgtaa 30546520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 267
Target Start/End: Original strand, 31727990 - 31728113
Alignment:
Q  142 agtgtatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagca 241  Q
    ||||| || ||||||||||||  ||||||||| |  |||||||  |||||||||||||||||||| |  |||| |||| |||||||| |||||  |  ||    
T  31727990 agtgtttaattattttacacatacatcaaatggt--gttgccacatcaattaatgaatatgaaaacacttgagttgtcgcattcattcattgatgtgaca 31728087  T
Q  242 acacatcattggatgcatgtgtaata 267  Q
      |||||||||||||||||| |||||    
T  31728088 ttacatcattggatgcatgtataata 31728113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 21105944 - 21106016
Alignment:
Q  179 ttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcatt 251  Q
    |||||||| |||||||| ||| | |||||| || || ||| | ||||||||||| ||||| ||||||||||||    
T  21105944 ttgccatgccaattaatcaatttaaaaatatattagttgttatattcattaattaacataacaacacatcatt 21106016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 29276208 - 29276316
Alignment:
Q  151 ttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcat 250  Q
    |||||||||||| ||| |||| ||| ||||| ||  ||||||||| ||||||  |  | ||||| ||||| ||||||||||||||||  ||| |||||||    
T  29276208 ttattttacacatgcaacaaaagatgtgttgtcacttcaattaattaatatggtagcatatgagctgtcatattcattaattgacatgacaaaacatcat 29276307  T
Q  251 tggatgcat 259  Q
     | ||||||    
T  29276308 cgaatgcat 29276316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 40012057 - 40012005
Alignment:
Q  151 ttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatga 203  Q
    |||||||||||| |||   |||||| |||| ||||||||||||||||||||||    
T  40012057 ttattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga 40012005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 265
Target Start/End: Complemental strand, 35970557 - 35970443
Alignment:
Q  151 ttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcat 250  Q
    ||||||| |||| ||||| |||||| ||||| || |||||||||| |||||||||| | || ||  |||| |||||||||||||| |  |||||||| ||    
T  35970557 ttattttgcacacgcatccaatgatatgttgtcacgtcaattaataaatatgaaaacacataagccgtcatattcattaattgacgtgacaacacatgat 35970458  T
Q  251 tggatgcatgtgtaa 265  Q
    || ||||||||||||    
T  35970457 tgaatgcatgtgtaa 35970443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 8173120 - 8173245
Alignment:
Q  139 gttagtgtatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacata 238  Q
    ||||||||| | |||||||||| | | ||| |||||| ||||| || || ||||||||||||| |||| |   ||| ||| | ||||||||||||| ||     
T  8173120 gttagtgtacaattattttacatatgtatctaatgatatgttgtcacgttaattaatgaatataaaaacac--gagttgttatattcattaattgatatg 8173217  T
Q  239 gcaacacatcattggatgcatgtgtaat 266  Q
    ||||||||||| ||||||||||| ||||    
T  8173218 gcaacacatcactggatgcatgtataat 8173245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 1465743 - 1465857
Alignment:
Q  151 ttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcat 250  Q
    |||||||||||| ||||| |||||| ||||| || |||||||||| |||||||||| | | ||| ||||| ||| || || |||  | | ||||||||||    
T  1465743 ttattttacacatgcatccaatgatgtgttgtcacgtcaattaataaatatgaaaacacacgagttgtcatattgatcaaatgatgtggaaacacatcat 1465842  T
Q  251 tggatgcatgtgtaa 265  Q
    |||||||||||||||    
T  1465843 tggatgcatgtgtaa 1465857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 35120134 - 35120212
Alignment:
Q  187 tcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcattggatgcatgtgtaa 265  Q
    |||||||||||||||||||| | | ||| ||||  ||| |||||||||||| |||| ||||||||||||||||||||||    
T  35120134 tcaattaatgaatatgaaaacatacgagttgtcgtatttattaattgacatggcaatacatcattggatgcatgtgtaa 35120212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 51587367 - 51587435
Alignment:
Q  138 tgttagtgtatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaa 206  Q
    |||||||||| | |||||||||||| ||||||||  || |||||| | |||||||||||||||||||||    
T  51587367 tgttagtgtacaattattttacacatgcatcaaacaatgtgttgctacgtcaattaatgaatatgaaaa 51587435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 28016685 - 28016590
Alignment:
Q  170 aatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcattggatgcatgtgtaa 265  Q
    |||||| ||||| ||  |||||||||||| ||||||| | ||||| ||||| |||| |||||||| ||  ||||||||||||| ||| ||||||||    
T  28016685 aatgatgtgttgacacatcaattaatgaacatgaaaacatatgagctgtcatattcgttaattgaaatgacaacacatcattgaatgtatgtgtaa 28016590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 16306518 - 16306583
Alignment:
Q  183 catgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatc 248  Q
    |||||||||||||||||||||||||| ||||| ||||| | || ||||||||| |  |||||||||    
T  16306518 catgtcaattaatgaatatgaaaatacatgagttgtcatactcgttaattgacgttacaacacatc 16306583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 52066895 - 52066844
Alignment:
Q  183 catgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattga 234  Q
    |||||||||||||||||||||||||| | ||| ||||| || ||||||||||    
T  52066895 catgtcaattaatgaatatgaaaatacaagagttgtcatatccattaattga 52066844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 35120226 - 35120168
Alignment:
Q  142 agtgtatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaata 200  Q
    |||||| | |||||||||||| ||||| |||||| | ||||||||||||||||| ||||    
T  35120226 agtgtaaagttattttacacatgcatccaatgatgtattgccatgtcaattaataaata 35120168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 43859146 - 43859072
Alignment:
Q  177 tgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcatt 251  Q
    ||||||||  ||||| ||| ||||| |||||| | ||| ||| | ||||||||||||| ||||||||||||||||    
T  43859146 tgttgccacatcaatcaataaatataaaaatacacgagttgttatattcattaattgatatagcaacacatcatt 43859072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 1280025 - 1279984
Alignment:
Q  224 tcattaattgacatagcaacacatcattggatgcatgtgtaa 265  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  1280025 tcattaattgacgtggcaacacatcattgggtgcatgtgtaa 1279984  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 265
Target Start/End: Complemental strand, 10172525 - 10172411
Alignment:
Q  151 ttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcat 250  Q
    |||||||||||| ||||||||||||  |||| || |||||||| ||||||||| ||   ||  | | |||||||||||||||||| || |||||||| ||    
T  10172525 ttattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatgacaactcatatgttttcacattcattaattgacgtaacaacacattat 10172426  T
Q  251 tggatgcatgtgtaa 265  Q
     ||||| ||||||||    
T  10172425 cggatgtatgtgtaa 10172411  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 10172441 - 10172520
Alignment:
Q  186 gtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcattggatgcatgtgtaa 265  Q
    |||||||||||||| |||||| | ||||| ||||| ||||| |||||||| |  |||| ||||||| |||||||||||||    
T  10172441 gtcaattaatgaatgtgaaaacatatgagttgtcatattcactaattgacgtgacaacgcatcatttgatgcatgtgtaa 10172520  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 28820081 - 28820049
Alignment:
Q  174 atttgttgccatgtcaattaatgaatatgaaaa 206  Q
    ||||||||||| |||||||||||||||||||||    
T  28820081 atttgttgccacgtcaattaatgaatatgaaaa 28820049  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 26281014 - 26280920
Alignment:
Q  138 tgttagtgtatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaatt 232  Q
    |||||||||||| |||||||||||| | || ||||||| |||||  |||| |||| ||||||||||||| | ||||| ||| | |||||||||||    
T  26281014 tgttagtgtataattattttacacatgtattaaatgatgtgttgtgatgttaattgatgaatatgaaaacatatgagttgttatattcattaatt 26280920  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 24766098 - 24766034
Alignment:
Q  187 tcaattaatgaatatgaaaataaatgagatgtcacattcattaattgacatagcaacacatcatt 251  Q
    ||||||||| |||||||||| | ||| | ||||| |||||||||||||  | |||||||||||||    
T  24766098 tcaattaataaatatgaaaacacatgcgttgtcatattcattaattgatgtggcaacacatcatt 24766034  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 14717397 - 14717308
Alignment:
Q  146 tatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattgac 235  Q
    |||| |||||||||||| ||||| |||||| ||||| ||  |||||||||||||||||||| |  |||| || || ||| ||||||||||    
T  14717397 tataattattttacacatgcatctaatgatgtgttgtcacatcaattaatgaatatgaaaacacgtgagttgccatatttattaattgac 14717308  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 32892000 - 32892093
Alignment:
Q  141 tagtgtatatttattttacacaagcatcaaatgatttgttgccatgtcaattaatgaatatgaaaataaatgagatgtcacattcattaattga 234  Q
    ||||| ||| |||||||||||| ||||| ||| |||| ||| | | | |||||||||||||||||| | ||||| ||||  ||||||| |||||    
T  32892000 tagtggataattattttacacatgcatccaataatttattgtcgtattaattaatgaatatgaaaacacatgagttgtcgtattcattgattga 32892093  T

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Target: scaffold0245 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 5703 - 5662
Alignment:
Q  224 tcattaattgacatagcaacacatcattggatgcatgtgtaa 265  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  5703 tcattaattgacgtggcaacacatcattgggtgcatgtgtaa 5662  T

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Target: scaffold0229 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 6033 - 5992
Alignment:
Q  224 tcattaattgacatagcaacacatcattggatgcatgtgtaa 265  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  6033 tcattaattgacgtggcaacacatcattgggtgcatgtgtaa 5992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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