View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11094_high_3 (Length: 613)

Name: NF11094_high_3
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11094_high_3
NF11094_high_3
[»] chr4 (1 HSPs)
chr4 (20-598)||(37437793-37438371)
[»] chr8 (8 HSPs)
chr8 (20-382)||(115383-115745)
chr8 (26-322)||(606738-607034)
chr8 (20-382)||(178042-178407)
chr8 (498-595)||(607292-607389)
chr8 (506-595)||(115076-115165)
chr8 (437-477)||(178541-178581)
chr8 (437-493)||(607216-607272)
chr8 (437-479)||(115207-115249)
[»] scaffold0209 (4 HSPs)
scaffold0209 (27-273)||(9884-10130)
scaffold0209 (27-273)||(23338-23584)
scaffold0209 (437-492)||(9595-9650)
scaffold0209 (437-492)||(23049-23104)


Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 20 - 598
Target Start/End: Complemental strand, 37438371 - 37437793
Alignment:
Q  20 gttggtaaaactatatgacatagttgttccaaccagtgtcaaaaaggacaattagtttatcaagctatcacatgcatacttttcatcttgttacccttgt 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37438371 gttggtaaaactatatgacatagttgtcccaaccagtgtcaaaaaggacaattggtttatcaagctatcacatgcatacttttcatcttgttacccttgt 37438272  T
Q  120 cacaaagaatcttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatgatctcctgatgaaactaa 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  37438271 cacaaagaatcttcagaaagaaagtttgagtcaaaaaattgggacaaataacttcatttcattgatttgattagatgttatgatctcccgatgaaactaa 37438172  T
Q  220 gcaatcaaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctggtataagctttgagaaaattcataatagatc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  37438171 gcaatcaaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctagtataagctttgagaaaattcataaaagatc 37438072  T
Q  320 cttgattgatgtaaagtttgagataaaaccttttctgagttggtttatttgtttgggttgtttgacatgcttcaagtatttctattttgtgagttaaaag 419  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37438071 cttgatttacgtaaagtttgagataaaaccttttctgagttagtttatttgtttgggttgtttgacatgcttcaagtatttctattttgtgagttaaaag 37437972  T
Q  420 tagatcacacagctaaatatgtttctttgattgattgtcttattcacaccaaagatgacgtggagttgttggttaaggatgaactaggaagccacaagga 519  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37437971 tagatcacacaactaaatatgtttctttgattgattgtcttattcacaccaaagatgacgtggagttgttggttaaggatgaactaggaagccacaagga 37437872  T
Q  520 attgacaagtctcatcaacaatctatgcaaatatgttgtggcgaattcatcgtgttactatcaacttgtggaagatttt 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37437871 attgacaagtctcatcaacaatctatgcaaatatgttgtggcgaattcatcgtgttactatcaacttgtggaagatttt 37437793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 115745 - 115383
Alignment:
Q  20 gttggtaaaactatatgacatagttgttccaaccagtgtcaaaaaggacaattagtttatcaagctatcacatgcatacttttcatcttgttacccttgt 119  Q
    ||||| |||||||||||||| | ||||||||| ||  ||||||||| |||||| |||| |||||||  ||||||  || ||| |||||||||||||   |    
T  115745 gttggaaaaactatatgacacaattgttccaagcaaggtcaaaaagcacaattggtttctcaagcttgcacatgagtattttgcatcttgttacccgcat 115646  T
Q  120 cacaaagaatcttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatgatctcctgatgaaactaa 219  Q
    ||||| |||||||| ||||||||||||||| |||| || ||||| |||| || | |||||| |||||||||||||| ||   ||||||  ||||||||||    
T  115645 cacaaggaatcttcagaaagaaagtttgaggcaaagaaatgggagaaatcacgtcatttcactgatttgattagatattcctatctccctatgaaactaa 115546  T
Q  220 gcaatcaaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctggtataagctttgagaaaattcataatagatc 319  Q
      |||||  ||| ||||| ||| ||||| ||||||||| |||||||| ||||||  |||||||||||||||||||||||||||||  ||||||| |||||    
T  115545 aaaatcagtataatgattttcacaaagaatgtttgatggtaaggactgcaacaaagttgaatgaagctggtataagctttgagaaggttcataacagatc 115446  T
Q  320 cttgattgatgtaaagtttgagataaaaccttttctgagttggtttatttgtttgggttgttt 382  Q
     ||| ||||  |||||||||||| |||||||||  ||||||||||| ||||||| ||||||||    
T  115445 attgcttgacataaagtttgagaaaaaacctttgttgagttggtttctttgtttaggttgttt 115383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 26 - 322
Target Start/End: Original strand, 606738 - 607034
Alignment:
Q  26 aaaactatatgacatagttgttccaaccagtgtcaaaaaggacaattagtttatcaagctatcacatgcatacttttcatcttgttacccttgtcacaaa 125  Q
    |||| |||||||||  |||||||||| ||||||||||||  |||||  ||||||||||||| ||||||  || ||| ||||||||||||||  ||||||     
T  606738 aaaattatatgacacggttgttccaagcagtgtcaaaaaccacaatcggtttatcaagctagcacatgagtattttgcatcttgttaccctcatcacaag 606837  T
Q  126 gaatcttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatgatctcctgatgaaactaagcaatc 225  Q
    || || || ||||||| |||||||  |||||||||||| |||| |||  ||||||  ||||||||||||| ||   ||||||  |||||||||||| |||    
T  606838 gagtcatcagaaagaatgtttgaggaaaaaaattgggagaaatcactccatttcaccgatttgattagatattcatatctcccaatgaaactaagcgatc 606937  T
Q  226 aaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctggtataagctttgagaaaattcataatagatcctt 322  Q
    || |||| ||||||||||| ||||||||||||| ||||||| ||||||  |||||||||||||| |||||| | |||||| || |||||||||||||    
T  606938 aatatatggattctcaaaatgagtgtttgatgtcaaggactgcaacaaagttgaatgaagctggcataagcctcgagaaagtttataatagatcctt 607034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 178042 - 178407
Alignment:
Q  20 gttggtaaaactatatgacatagttgttccaaccagtgtcaaaaaggacaattagtttatcaagctatcacatgcatacttttcatcttgttacccttgt 119  Q
    ||||| |||||||||||||| ||||||||||| ||||| ||||||| |||| | |||| | || ||  |||||| ||| |||  ||||||||| |||  |    
T  178042 gttggaaaaactatatgacacagttgttccaagcagtgacaaaaagcacaaatggtttctaaatcttgcacatgaatattttgtatcttgttatcctcat 178141  T
Q  120 cacaaagaatc---ttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatgatctcctgatgaaac 216  Q
    ||  | |||||   ||| ||||| | ||||| |||||| || ||||| |||| |||| ||||||||||||| |||||||||  | ||||||  ||||||     
T  178142 caacatgaatcatcttcagaaagtatgtttgggtcaaagaagtgggagaaatcacttcatttcattgatttaattagatgtgcttatctccccatgaaaa 178241  T
Q  217 taagcaatcaaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctggtataagctttgagaaaattcataatag 316  Q
    | |||| | | ||   ||||||||| |||||||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||  ||||||| ||    
T  178242 ttagcactaagaactctgattctcataaagagtgtttgatgttaaggagtgcaacaaagttgaatgaagctggtataagctttgagaaggttcataacag 178341  T
Q  317 atccttgattgatgtaaagtttgagataaaaccttttctgagttggtttatttgtttgggttgttt 382  Q
    ||||||  ||||  | |||||||||| ||| |||||  ||||||||||| | ||||| ||||||||    
T  178342 atccttacttgacattaagtttgagaaaaaccctttgttgagttggtttttatgtttaggttgttt 178407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 498 - 595
Target Start/End: Original strand, 607292 - 607389
Alignment:
Q  498 atgaactaggaagccacaaggaattgacaagtctcatcaacaatctatgcaaatatgttgtggcgaattcatcgtgttactatcaacttgtggaagat 595  Q
    ||||||||||||||||| ||||||| || |||||  | | |||| ||| |||| |||||||| |||||||||||||||| || |||||| ||||||||    
T  607292 atgaactaggaagccacgaggaattaacgagtcttgttatcaatttatccaaacatgttgtgacgaattcatcgtgttattaccaacttatggaagat 607389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 595
Target Start/End: Complemental strand, 115165 - 115076
Alignment:
Q  506 ggaagccacaaggaattgacaagtctcatcaacaatctatgcaaatatgttgtggcgaattcatcgtgttactatcaacttgtggaagat 595  Q
    |||||| || ||||||| ||||| ||  | ||||||||||||||| |||||||| | ||||| |||||||| || |||||| ||||||||    
T  115165 ggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgttgtgacaaattcgtcgtgttattaccaacttatggaagat 115076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 178541 - 178581
Alignment:
Q  437 tatgtttctttgattgattgtcttattcacaccaaagatga 477  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  178541 tatgtttctttgattgattctcttattcaaaccaaagatga 178581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 493
Target Start/End: Original strand, 607216 - 607272
Alignment:
Q  437 tatgtttctttgattgattgtcttattcacaccaaagatgacgtggagttgttggtt 493  Q
    |||||||||||| |||||| ||||||| ||||||||||||| |  ||||||||||||    
T  607216 tatgtttctttgcttgattctcttattgacaccaaagatgatgcagagttgttggtt 607272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 479
Target Start/End: Complemental strand, 115249 - 115207
Alignment:
Q  437 tatgtttctttgattgattgtcttattcacaccaaagatgacg 479  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||    
T  115249 tatgtttctttgattgattctcttattcacaccgaagaagacg 115207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 10130 - 9884
Alignment:
Q  27 aaactatatgacatagttgttccaaccagtgtcaaaaaggacaattagtttatcaagctatcacatgcatacttttcatcttgttacccttgtcacaaag 126  Q
    ||||| |||| || ||||||||||| || |||||||||  |||||  ||||| || |||| ||||||  || ||| | ||||| ||||||  |||| |||    
T  10130 aaactctatggcacagttgttccaaacaatgtcaaaaaccacaatctgtttaccatgctagcacatgactattttgcttcttgctaccctcatcaccaag 10031  T
Q  127 aatcttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatgatctcctgatgaaactaagcaatca 226  Q
    | || ||  |||||| |||||||  |||||||||||| |||| | || |||| | |||||||||||| | || | ||||||  ||||| |||||||||||    
T  10030 agtcatcaaaaagaatgtttgaggaaaaaaattgggagaaatcatttcattttactgatttgattaggtcttcttatctcccaatgaagctaagcaatca 9931  T
Q  227 aaatattgattctcaaaaagagtgtttgatgttaaggactccaacaa 273  Q
    | ||||||||||||||| | | ||||||| |  ||||||| ||||||    
T  9930 acatattgattctcaaagaaaatgtttgaagccaaggactgcaacaa 9884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 23584 - 23338
Alignment:
Q  27 aaactatatgacatagttgttccaaccagtgtcaaaaaggacaattagtttatcaagctatcacatgcatacttttcatcttgttacccttgtcacaaag 126  Q
    ||||| |||| || ||||||||||| || |||||||||  |||||  ||||| || |||| ||||||  || ||| | ||||| ||||||  |||| |||    
T  23584 aaactctatggcacagttgttccaaacaatgtcaaaaaccacaatctgtttaccatgctagcacatgactattttgcttcttgctaccctcatcaccaag 23485  T
Q  127 aatcttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatgatctcctgatgaaactaagcaatca 226  Q
    | || ||  |||||| |||||||  |||||||||||| |||| | || |||| | |||||||||||| | || | ||||||  ||||| |||||||||||    
T  23484 agtcatcaaaaagaatgtttgaggaaaaaaattgggagaaatcatttcattttactgatttgattaggtcttcttatctcccaatgaagctaagcaatca 23385  T
Q  227 aaatattgattctcaaaaagagtgtttgatgttaaggactccaacaa 273  Q
    | ||||||||||||||| | | ||||||| |  ||||||| ||||||    
T  23384 acatattgattctcaaagaaaatgtttgaagccaaggactgcaacaa 23338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 492
Target Start/End: Complemental strand, 9650 - 9595
Alignment:
Q  437 tatgtttctttgattgattgtcttattcacaccaaagatgacgtggagttgttggt 492  Q
    |||||||||||  |||||| ||||||||||||||||||||| |  |||||||||||    
T  9650 tatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggt 9595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 492
Target Start/End: Complemental strand, 23104 - 23049
Alignment:
Q  437 tatgtttctttgattgattgtcttattcacaccaaagatgacgtggagttgttggt 492  Q
    |||||||||||  |||||| ||||||||||||||||||||| |  |||||||||||    
T  23104 tatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggt 23049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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