View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11094_high_8 (Length: 387)
Name: NF11094_high_8
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11094_high_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 36663783 - 36663410
Alignment:
| Q |
14 |
agagacaagatttacagattcatgcacatcgaacaatggcatttcgacacctaaatagaactcacccaataacaccatcccattctatacatacattatt |
113 |
Q |
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| T |
36663783 |
agagacaagatttacagattcatgcacatcgaacaatggcatttcgacacctaaatagaactcacccaataacaccatcccattctatacatacattatt |
36663684 |
T |
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| Q |
114 |
catacatcccatctaaccaagtagaccaatcacaatttcaacttccaagaaaccaaaatggatcaaaaactagcacatgctaacaaaatgattgagctac |
213 |
Q |
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| T |
36663683 |
tatacatcccatctaaccaagtagaccaatcacaatttcaacttccaagaaaccaaaatggatcaaaaactagcacatgctaacaaaatgattgagctac |
36663584 |
T |
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| Q |
214 |
ctataagctacaattatcagaatattttccaatgaaaagttcaacacacaagactatacttaagattcaaatttcaaaatgtgccaaccaagttcatcag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
36663583 |
ctataagctacaattatcagaatattttccaatgaaaagttcaacacacaagattatacttatgattccaatttcaaaatgtgccaaccaagttcatcag |
36663484 |
T |
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| Q |
314 |
atcagattacacaattacagtttcagaatgtcacaaccaagttcatcaaacaatattatacacactcaaagttt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36663483 |
atcagattacacaattacagtttcagaatgtcacaaccaagttcatcaaacaatattatacacactcaaagttt |
36663410 |
T |
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