View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11094_low_10 (Length: 360)
Name: NF11094_low_10
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11094_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 43068704 - 43069073
Alignment:
| Q |
1 |
agtaacaaaaattggattgttaagcaagatgtggatgatgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatgaattctatgt |
100 |
Q |
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| T |
43068704 |
agtaacaaaaattggattgttaagcaagatgtggatgatgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatgaattctatgt |
43068803 |
T |
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| Q |
101 |
gttcatcttcttcatcagagttagatgatgatcaagaagtatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatggtcccttata |
200 |
Q |
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| T |
43068804 |
gttcatcttcttcatcagagttagatgatgatcaagaagcatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatggtcccttata |
43068903 |
T |
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| Q |
201 |
tgaactatcagaacttatgaaccatctccctttgaagtaagca----atatttctcatgcatgatgc---------------------atttttatattc |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
43068904 |
tgaactatcagaacttatgaaccatctccctttgaagtaagcaatatatatttctcatgcatgatgcattttttttgctatatatataatttttatattc |
43069003 |
T |
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| Q |
276 |
tatatgaatattttgttgtactttaattcaattctatatatttattgtgacatttgcaggagaggattgt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069004 |
tatatgaatattttgttgtactttaattcaattctatatatttattgtgacatttgcaggagaggattgt |
43069073 |
T |
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