View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11094_low_19 (Length: 229)

Name: NF11094_low_19
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11094_low_19
NF11094_low_19
[»] chr2 (4 HSPs)
chr2 (1-215)||(8677497-8677711)
chr2 (141-215)||(8723707-8723782)
chr2 (74-116)||(8723540-8723582)
chr2 (51-81)||(8723485-8723515)
[»] chr5 (3 HSPs)
chr5 (141-215)||(21237099-21237169)
chr5 (1-81)||(21237368-21237450)
chr5 (74-114)||(21237303-21237343)
[»] chr3 (1 HSPs)
chr3 (1-81)||(14324326-14324405)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 8677497 - 8677711
Alignment:
Q  1 aaaacccacacaaacacctcactagcaaaaaagccaaagcgtgtatttatgatcatctacattttgattgattaatgaatattataaacattatttaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8677497 aaaacccacacaaacacctcactagcaaaaaagccaaagcgtgtatttatgatcatctacattttgattgattaatgaatattataaacattatttaaat 8677596  T
Q  101 tttagttgacacatcaattaaatttggtagcctaagatggttcatacttcatgaagtgagttagctaacctatcacaagtaacatggttcccccgcatga 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8677597 tttagttgacacatcatttaaatttggtagcctaagatggttcatacttcatcaagtgagttagctaacctatcacaagtaacatggttcccccgcatga 8677696  T
Q  201 gacatgacaacaaac 215  Q
    |||||||||||||||    
T  8677697 gacatgacaacaaac 8677711  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 8723707 - 8723782
Alignment:
Q  141 ttcatacttcatgaagtgagtta-gctaacctatcacaagtaacatggttcccccgcatgagacatgacaacaaac 215  Q
    |||||||||||| |||||||||| | |||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  8723707 ttcatacttcatcaagtgagttatgttaacctatcacaagtaacatggttcctccgcatgagacatggcaacaaac 8723782  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 8723540 - 8723582
Alignment:
Q  74 aatgaatattataaacattatttaaattttagttgacacatca 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  8723540 aatgattattataaacattatttaaattttagttgacacatca 8723582  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 81
Target Start/End: Original strand, 8723485 - 8723515
Alignment:
Q  51 gatcatctacattttgattgattaatgaata 81  Q
    |||||||||||||||||||||||||||||||    
T  8723485 gatcatctacattttgattgattaatgaata 8723515  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 21237169 - 21237099
Alignment:
Q  141 ttcatacttcatgaagtgagttagctaacctatcacaagtaacatggttcccccgcatgagacatgacaacaaac 215  Q
    |||||||||||| ||||||||||    |||||||| |||||||||||||||||||||||||||||| ||||||||    
T  21237169 ttcatacttcatcaagtgagtta----acctatcagaagtaacatggttcccccgcatgagacatggcaacaaac 21237099  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 21237450 - 21237368
Alignment:
Q  1 aaaacccacacaaacacctcactagcaaaaaagc--caaagcgtgtatttatgatcatctacattttgattgattaatgaata 81  Q
    |||| |||||||||||  || |||||||||||    ||||||||| || |||||||||||||||||||||||||||| |||||    
T  21237450 aaaatccacacaaacagatctctagcaaaaaaataacaaagcgtgaatctatgatcatctacattttgattgattaacgaata 21237368  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 21237343 - 21237303
Alignment:
Q  74 aatgaatattataaacattatttaaattttagttgacacat 114  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  21237343 aatgattattataaacattatttaaattttagtagacacat 21237303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 14324405 - 14324326
Alignment:
Q  1 aaaacccacacaaacacctcactagcaaaaaagccaaagcgtgtatttatgatcatctacattttgattgattaatgaata 81  Q
    ||||||||||  || |||||  |||||| ||| |||||| ||||||||||||||   |||||||||||||||| |||||||    
T  14324405 aaaacccacaggaatacctccttagcaacaaa-ccaaagagtgtatttatgatctattacattttgattgattgatgaata 14324326  T

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