View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11094_low_2 (Length: 660)
Name: NF11094_low_2
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11094_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 14 - 644
Target Start/End: Complemental strand, 48754800 - 48754192
Alignment:
| Q |
14 |
tggacatcattgttcaaaaaatgaaaatggaaatcagaggcaacctcttaaatggccttttctgagtcattcaaggtgtttcagggctttgatccccata |
113 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48754800 |
tggaaatcattgttcaaaaaatgaaactggaaatcagaggcaacctcttaaatggccttttctgagtcattcaaggtgtttcagggctttgatccccata |
48754701 |
T |
|
| Q |
114 |
ttgagcttcagacaattaactgttctaatttgtaaccacaatcagagagataacacaccacaataaacaaatacaaaatgaaatcgagtcaaaatctcgt |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48754700 |
ttgagcttcagacaattaactgttctaatttgtaaccacaatcagagagacaacacaccacaataaacaaataaaaaatgaaatcgagtcaaaatctcgt |
48754601 |
T |
|
| Q |
214 |
cagtcccagctgaaatcctgcagctctcaaatttgtacggctagaacaaaatatcccaccctctatttattccttcagggtttcaataagggttacccag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48754600 |
cagtcccagctgaaatcctgcagctctcaaatttgtacggctagaacaaaatatcccaccctctatttattccttcagggtttcaataagggttacccag |
48754501 |
T |
|
| Q |
314 |
caaattcagatacacaggtattgcaatgaaaatctggattaagtttggccaaattaagtaacattgattcacaactacgcaatcatagatccaatccaca |
413 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48754500 |
caaattcagatacacaggtattgcaatgtaaatctggattaagtttggccaaattaagtaacattgattcacaactacgcaatcatagatccaatccaca |
48754401 |
T |
|
| Q |
414 |
ttaaacaatattttgctaaagcaaggatatcaattgcagtcgtgttgtaattaaagtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgt |
513 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48754400 |
ttaaacaatattttgctaaagcaaggatatcaattgcagtcgtgttgtaat----------------------tcaagatcgggtcacaataatcaatgt |
48754323 |
T |
|
| Q |
514 |
cactgtcacaatcatcatatgtagttaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactg |
613 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48754322 |
caatgtcacaatcatcatatgtagttaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagccttatcataaatatgaactg |
48754223 |
T |
|
| Q |
614 |
tcaaaccttaaccaaaaaattacaaagaaaa |
644 |
Q |
| |
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||||| ||||||||||||||||||||||||| |
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| T |
48754222 |
tcaaaacttaaccaaaaaattacaaagaaaa |
48754192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 225 - 365
Target Start/End: Complemental strand, 49053265 - 49053124
Alignment:
| Q |
225 |
gaaatcctgcagctctcaaatttgtacggctagaacaaaatatccc-accctctatttattccttcagggtttcaataagggttacccagcaaattcaga |
323 |
Q |
| |
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|||| ||||||| |||| ||||||||| |||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||| |||| ||||| |
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| T |
49053265 |
gaaaccctgcaggtctcgaatttgtacagctagaacaaaatatccccaccctctattttttccttcagagtctcaataagggttacccaacaaactcaga |
49053166 |
T |
|
| Q |
324 |
tacacaggtattgcaatgaaaatctggattaagtttggccaa |
365 |
Q |
| |
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||||||||||||||||| || |||| || |||||||||||| |
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| T |
49053165 |
tacacaggtattgcaatcaatttctgaatcaagtttggccaa |
49053124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 427 - 644
Target Start/End: Complemental strand, 49053051 - 49052832
Alignment:
| Q |
427 |
tgctaaagcaaggatatcaattgcagtcgtgttgtaattaaagtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgtcactgtcacaatc |
526 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||| || || ||||||||||||||||||||| |||||||||| |
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| T |
49053051 |
tgctaaagcaaggatttcaattgcagtcgcgttgtaattaaattcacgc-aaaagagcggcca--atagggtcacaataatcaatgtcaatgtcacaatc |
49052955 |
T |
|
| Q |
527 |
atcatatgtagttaa--------------tacaaacaagaga-atcataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaac |
611 |
Q |
| |
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|| ||||| ||| || | ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | | |
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| T |
49052954 |
attatatgcagtaaatgcaaagaaccatttccaaacaagagatttcataattcaaatttctg----------ctaacaaagctttatcataaatacaatc |
49052865 |
T |
|
| Q |
612 |
tgtcaaaccttaaccaaaaaattacaaagaaaa |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
49052864 |
agtcaaaccttaaccaaaaaattacaaagaaaa |
49052832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 544 - 632
Target Start/End: Complemental strand, 35914421 - 35914332
Alignment:
| Q |
544 |
caaacaagagaat-cataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaaaccttaaccaaaaaa |
632 |
Q |
| |
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||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| | ||||||||| | ||||||||||| |
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| T |
35914421 |
caaacgagagaattcataattcaaatatctgctagagcaacctaacaaagctttataagaaatgttaactgtcaagcactaaccaaaaaa |
35914332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 35914736 - 35914688
Alignment:
| Q |
358 |
ttggccaaattaagtaacattgattcacaactacgcaatcatagatcca |
406 |
Q |
| |
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||||||||| ||| |||||||||||||||||| ||||||| ||||||| |
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|
| T |
35914736 |
ttggccaaactaaagaacattgattcacaactaagcaatcaaagatcca |
35914688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 29031700 - 29031626
Alignment:
| Q |
217 |
tcccagctgaaatcctgcagctctcaaatttgtacggctagaacaaaatatcccaccctctatttattccttcag |
291 |
Q |
| |
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|||||| ||||| ||| |||||||| |||||| || |||||||||||||||| |||||||| || ||||||||| |
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| T |
29031700 |
tcccagatgaaaccctacagctctcgaatttggactgctagaacaaaatatctcaccctcttttctttccttcag |
29031626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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