View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11094_low_4 (Length: 588)
Name: NF11094_low_4
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11094_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 31680725 - 31680550
Alignment:
| Q |
22 |
cggcgcgggacaagtgaccggtgatgagatacggtggagttgagttgggagaaggatttcggagtaggagttggtggagagaaagcaactgaagaagatt |
121 |
Q |
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| T |
31680725 |
cggcgcgggacaagtgaccggtgatgagatacggtggagttgagttgggagaaggatttcggagtaggagtcagtggagagaaagcaaccgaagaagatt |
31680626 |
T |
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| Q |
122 |
gtgatgaggaagagaaacgaaacggagtcgtttgacatgatgttggagaagtgaagaaatggaaaagaggatcaac |
197 |
Q |
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| T |
31680625 |
gtgatgaggaatagaaacgaaacggcgtcgtttgacatgatgttggagaagtgaagaaatggaaaagaggatcaac |
31680550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 509 - 575
Target Start/End: Complemental strand, 31680531 - 31680465
Alignment:
| Q |
509 |
agtccgatgtaattttgagtcaatgatcctcttaggaactataggtttcacttaaattttttccttc |
575 |
Q |
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| T |
31680531 |
agtccgatgtaattttgagtcaatgatccttttaggaaccgtaggtttcacttaaattttttccttc |
31680465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 31693402 - 31693259
Alignment:
| Q |
29 |
ggacaagtgaccggtgatgagatacggtggagttgagttgggagaaggatttcggagtaggagttggtggagagaaagcaactgaagaagattgtgatga |
128 |
Q |
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| T |
31693402 |
ggacaattgaccgacgatgagatacggcggagttgagttgggagaagaattttcaagtgagagttagagaagaaaaagcaa-tg--gaagattgtgataa |
31693306 |
T |
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| Q |
129 |
ggaagagaaacgaaacggagtcgtttgacatgatgttggagaagtgaaga |
178 |
Q |
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| T |
31693305 |
ggaagagatacaaaacaaagtggcttgac---atgttggagaagtgaaga |
31693259 |
T |
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