View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11094_low_5 (Length: 534)
Name: NF11094_low_5
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11094_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 9 - 534
Target Start/End: Complemental strand, 43225276 - 43224761
Alignment:
| Q |
9 |
agcagagaatcaaggtccttcatg-aacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatagc |
107 |
Q |
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| T |
43225276 |
agcagagaatcaaggtcctttatggaacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatagc |
43225177 |
T |
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| Q |
108 |
attgttgttgccgcactttattctcctccactctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttatttaattaac |
207 |
Q |
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| T |
43225176 |
attgttgttgccgcactttattctcctccattctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttat----ttaac |
43225081 |
T |
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| Q |
208 |
tcatgtggtaactcatcttccttacattagtatcttaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtat |
307 |
Q |
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|||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225080 |
tcatgtcgtaactcatcttccttacattagcatctgaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtat |
43224981 |
T |
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| Q |
308 |
taggcttgttcaaggtatgtatgtttggattttcatggcctttggaattgttccatgctatagtgcagattttttctctcatactgtgctctcnnnnnnn |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
43224980 |
taggcttgttcaaggtatgtatgtttggattttcatggcctttggaattgttccatgc--tagtgcagattttttctctcttactgtgctct-----ttt |
43224888 |
T |
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| Q |
408 |
nnncttctcgctctttatcctattatacaactctttcttatatctcgtctctagtaataatgttttgctttgaaattgattaatatagtcaatattatct |
507 |
Q |
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| T |
43224887 |
ttttttctcgctctttatcctgttatacaactctttcttatatctcgtctctagtaataatgttttgctttgaaattgattaatatagtcaatattatct |
43224788 |
T |
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| Q |
508 |
gaaaagaacagcggagaacaacatgaa |
534 |
Q |
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| T |
43224787 |
gaaaagaacagcggagaacaacatgaa |
43224761 |
T |
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