View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11094_low_6 (Length: 469)

Name: NF11094_low_6
Description: NF11094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11094_low_6
NF11094_low_6
[»] chr1 (1 HSPs)
chr1 (1-469)||(28329425-28329893)


Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 28329893 - 28329425
Alignment:
Q  1 tccagagcagtctctacctttgaatccttacagagacagtcaattatagtcttatatataattgcatcaggaggaacacataccttcattttcttaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28329893 tccagagcagtctctacctttgaatccttacagagacagtcaattatagtcttatatataattgcatcaggaggaacacataccttcattttcttaagaa 28329794  T
Q  101 ccagcatagcagcatcatgacggttgatcttgcaaagaccactaatcagtgtcccataactgacaatggttaggggaactccagctttcttcaatttatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28329793 ccagcatagcagcatcatgacggttgatcttgcaaagaccactaatcagtgtcccataactgacaatggttaggggaactccagctttcttcaatttatc 28329694  T
Q  201 atgaagatctaacgccatttgaacctcaccattaaaacacatagctttaagaagactgttaaaagtgataatattgggttcataacccagtttcagtaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28329693 atgaagatctaacgccatttgaacctcaccattaaaacacatagctttaagaagactgttaaaagtgataatattgggttcataacccagtttcagtaac 28329594  T
Q  301 ttcgcgaacatcgaaaatgcaagattagccttctttgcttgagcgaaaaaatttagaagaatgttgattgtatgaaagtttggcttcatgttgttaagtt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28329593 ttcgcgaacatcgaaaatgcaagattagccttctttgcttgagcgaaacaatttagaagaatgttgattgtatgaaagtttggcttcatgttgttaagtt 28329494  T
Q  401 ccatcgacctataatgggttacaacactgtcaaagttcttttgcatgaccagagagtgtaatcgattgt 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28329493 ccatcgacctataatgggttacaacactgtcaaagttcttttgcatgaccagagagtgtaatcgattgt 28329425  T

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