View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11095_high_1 (Length: 1181)

Name: NF11095_high_1
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11095_high_1
NF11095_high_1
[»] chr3 (2 HSPs)
chr3 (313-1166)||(55011885-55012745)
chr3 (1-279)||(55011580-55011867)


Alignment Details
Target: chr3 (Bit Score: 678; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 313 - 1166
Target Start/End: Original strand, 55011885 - 55012745
Alignment:
Q  313 aataggtactagtaattttagtcactactacttaccatgtttagtcgttactttaagaaaaaatgatgattttgacaattccctttatttttgtcatcac 412  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  55011885 aataggtactagtaattttagtcgctactacttaccatgtttagtcgttactttaagaaaaaatgatgattttgacatttccctttatttttgtcatcac 55011984  T
Q  413 ttcacgttcactacaaaggtttatgtaaaataaaagtgcattttgaaca-aaaaatttccgtgtgattatgtggaccacttcgtatcctcgaagtccgtg 511  Q
    |||||      |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55011985 ttcac------tacaaaggtttatgtaaaataaaagtgcattttgaacacaaaaatttccgtgtgattatgtggaccacttcgtatcctcaaagtccgtg 55012078  T
Q  512 aatttcatcggcattgcaactgtcttcaaaataaatgccatactccatttcgttactttaccatttccttaactgtgta---tactagtacgtcccccac 608  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||    
T  55012079 aatttcatcggcattgcaactgtcttctaaataaatgcaatactccatttcgttactttaccatttccttaactgtgtagtatactagtacgtcacccac 55012178  T
Q  609 gcgccaaacatggcagtgttactcatcttccatccaatttttaaaatgagaattcttttcacttttgtttaatcttcaaaaatgt---------tcac-- 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |         |||       
T  55012179 gcgccaaacatggcagtgttactcatcttccatccaatttttaaaatgagaattcttttcacttttgtttaatcttcaaaatattagatagatatcaaaa 55012278  T
Q  698 -----ctaattaaaaacattgtactattaggtgggtgacccaatctcagaccacaactgttgggagaggccagaagacatggacacaaacaggaaagtgt 792  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55012279 aatgactaattaaaaacattgtactattaggtgggtgacccaatctcagaccacaactgttgggagaggccagaagacatggacacaaacaggaaagtgt 55012378  T
Q  793 atgctgttgatgcacctaacccagcttccgatgtcgccggtgaaactgcagccgcacttgctgcttcttcgatggcattccggtcatcggatcccggtta 892  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55012379 atgctgttgatgcacctaacccagcttccgatgtcgccggtgaaactgcagccgcacttgctgcttcttcgatggcattccggtcatcggatcccggtta 55012478  T
Q  893 ttcagagacattactaagaaatgctgttaaggcatttcaatatgcagatagttacaggggcgcatacagtgacaatgctgatgttaaggatggtgtctgt 992  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55012479 ttcagagacattactaagaaatgctgttaaggcatttcaatatgcagatagttacaggggcgcatacagtgacaatgctgatgttaaggatggtgtctgt 55012578  T
Q  993 ccttattattgtgattttgatggataccaggttagtaagtagtatatttgactcttctttttcaactactactaatactatgtattgcaattttccnnnn 1092  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      |||||||||||||||||||||        
T  55012579 ccttattattgtgattttgatggataccaggttagtaagtagtatatttgattcttctttttcaactac------tactatgtattgcaattttcc-ttt 55012671  T
Q  1093 nnnataggtatccgatgttatcgttttgaattttctatttagaagatattgaaaatgattgtatatattgcaat 1166  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55012672 tttataggtatccgatgttatcgttttgaattttctatttagaagatattgaaaatgattgtatatattgcaat 55012745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 55011580 - 55011867
Alignment:
Q  1 tcctaatgaactcagaaacgctttggtcgcaattcgttggagtactgattatttgcttaagactgtttctcagtctaaccgcatttttgttcaggtattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55011580 tcctaatgaactcagaaacgctttggtcgcaattcgttggagtactgattatttgcttaagactgtttctcagtctaaccgcatttttgttcaggtattt 55011679  T
Q  101 ttcattttactcaatcgttgggttcactcactcacgg------acttttcac-tcttccttaatttannnnnnnggttgcataatttatttacggtattc 193  Q
    |||||||||||||||||||||||||||||||||||||      ||||||||| ||||||||||||||       ||||||||||||||||||||||||||    
T  55011680 ttcattttactcaatcgttgggttcactcactcacggtcacggacttttcacctcttccttaatttatttttttggttgcataatttatttacggtattc 55011779  T
Q  194 ata---aaatcaatttattgaaatggaaaatcatcgtgcgttcttcctagataactgtgccggtttactttacatttacaatccgcttt 279  Q
    ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  55011780 attcataaatcaatttattgaaatggaaaatcatcgtgcgttcttcctagataactgtgccggttta-tttacatttacaatccgcttt 55011867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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